Add comprehensive API documentation and TypeScript definitions #13

Workflow file for this run

	name: CI

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.12"]

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[test]"

	- name: Run pytest
	run: \|
	pytest --tb=short

	- name: Run integration tests
	run: \|
	python test_integration.py

	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.11"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8 black isort
	pip install -e .

	- name: Check code formatting with black
	run: \|
	black --check --diff .

	- name: Check import sorting with isort
	run: \|
	isort --check-only --diff .

	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# treat warnings as errors for consistent code quality
	flake8 . --count --max-complexity=10 --max-line-length=127 --statistics

	diffeomorphism-tests:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.11"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[test]"

	- name: Test enhanced diffeomorphism framework
	run: \|
	python -c "
	import sys
	sys.path.insert(0, '.')

	print('Testing enhanced diffeomorphism framework...')

	# Test imports
	from thurstone import SigmoidParams, comprehensive_quality_assessment
	from thurstone.enhanced_cube_to_simplex import EnhancedCubeToSimplexMapping
	from thurstone.adaptive_special_horse import AdaptiveSpecialHorse, SpecialHorseConfig, DistributionType
	from thurstone.enhanced_optimization import enhanced_optimize_diffeomorphism
	from thurstone.pure_optimizers import pure_optimize

	print('✅ All imports successful')

	# Test basic functionality
	sigmoid_params = [SigmoidParams(alpha=1.2, beta=4.0, gamma=0.5) for _ in range(2)]
	config = SpecialHorseConfig(distribution=DistributionType.NORMAL, base_ability=0.0)
	special_horse = AdaptiveSpecialHorse(config)
	mapping = EnhancedCubeToSimplexMapping(sigmoid_params=sigmoid_params, special_horse=special_horse)

	# Test mapping
	import numpy as np
	test_point = np.array([0.3, 0.7])
	result = mapping(test_point)
	assert abs(np.sum(result) - 1.0) < 1e-10, f'Simplex constraint violated: sum = {np.sum(result)}'

	print('✅ Basic mapping test passed')

	# Test quality assessment (minimal samples for speed)
	metrics = comprehensive_quality_assessment(mapping,
	symmetry_samples=20,
	volume_samples=5,
	smoothness_samples=5,
	coverage_samples=20,
	invertibility_samples=3,
	random_seed=42)

	assert metrics.symmetry_score is not None, 'Symmetry assessment failed'
	print('✅ Quality assessment test passed')

	# Test pure optimization (very minimal)
	def simple_objective(x):
	return np.sum((x - 0.5)**2)

	best_val, best_x = pure_optimize(simple_objective, 'HarmonySearch', n_trials=5, n_dim=2)
	assert best_val is not None, 'Optimization failed'

	print('✅ All enhanced framework tests passed!')
	"

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Add comprehensive API documentation and TypeScript definitions #13

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Add comprehensive API documentation and TypeScript definitions #13

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