hap2.bib

@article{nowak,
author    = {Robert M. Nowak and Rafal Ploski},
title     = {NullHap - a versatile application to estiate haplotype frequencies
from unphased genotypes in the presence of null alleles},
journal   = {BMC Bioinformatics},
year      = {2008},
volume    = {9},
pages    = {330},
}

@article{douglas,
	author  = {Douglas, J at al.},
	title   = {Experimentally derived haplotypes substantially increase the efficiency of linkage disequilibrium studies},
	journal = {Nat. Genet.},
	year    = {2001},
	volume  = {28},
	pages   = {361--364}
}

@article{gusev,
  title={Highly scalable genotype phasing by entropy minimization},
  author={Gusev, A. and Mandoiu, I.I. and Pasaniuc, B.},
  journal={Computational Biology and Bioinformatics, IEEE/ACM Transactions on},
  volume={5},
  number={2},
  pages={252--261},
  year={2008},
  publisher={IEEE}
}

@article{boost,
  title={Building hybrid systems with Boost. Python},
  author={Abrahams, D. and Grosse-Kunstleve, R.W. and Overloading, O.},
  journal={CC Plus Plus Users Journal},
  volume={21},
  number={7},
  pages={29--36},
  year={2003},
  publisher={CMP Media LLC}
}

@article{arlequin,
	author  = {Excoffier, L and Laval G and Schneider S},
	title   = {Arlequin ver. 3.0: An integrated software package for population genetics data analysis},
	journal = {Evolutionary Bioinformatics Online},
	year    = {2005},
	volume  = {1},
	pages   = {47--50}
}

@article{haploihp,
	author  = {Yoo, Y and Tang, J and Kaslow, R and Zhang, K},
	title   = {Haplotype inference for present-absent genotype data using previously identified haplotypes
 and haplotype patterns},
	journal = {Bioinformatics},
	year    = {2007},
	volume  = {23},
	pages   = {2399--2406}
}

@article{phase,
	author  = {Stephens, M and Smith, N and Donnelly, P},
	title   = {A new statistical method for haplotype reconstruction from population data},
	journal = {Am. J. Hum. Genet.},
	year    = {2001},
	volume  = {68},
	pages   = {978--989}
}


@inproceedings{bench,
  title={BioPerf: A benchmark suite to evaluate high-performance computer architecture on bioinformatics applications},
  author={Bader, D.A. and Li, Y. and Li, T. and Sachdeva, V.},
  booktitle={Workload Characterization Symposium, 2005. Proceedings of the IEEE International},
  pages={163--173},
  year={2005},
  organization={IEEE}
}

@article{hapmap,
  title={The HapMap project and its application to genetic studies of drug response},
  author={Deloukas, P. and Bentley, D. and others},
  journal={The pharmacogenomics journal},
  volume={4},
  number={2},
  pages={88--90},
  year={2004}
}

@article{em,
  title={Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population.},
  author={Excoffier, L. and Slatkin, M.},
  journal={Molecular biology and evolution},
  volume={12},
  number={5},
  pages={921--927},
  year={1995},
  publisher={SMBE}
}

@inproceedings{guts,
  title={Haplotyping as perfect phylogeny: conceptual framework and efficient solutions},
  author={Gusfield, D.},
  booktitle={Proceedings of the sixth annual international conference on Computational biology},
  pages={166--175},
  year={2002},
  organization={ACM}
}

@article{crum2000development,
  title={Development of a PCR-SSOP approach capable of defining the natural killer cell inhibitory receptor (KIR) gene sequence repertoires},
  author={Crum, KA and Logue, SE and Curran, MD and Middleton, D.},
  journal={Tissue Antigens},
  volume={56},
  number={4},
  pages={313--326},
  year={2000},
  publisher={Wiley Online Library}
}