Captain-ACHAB/tests/test_wwwachab_DEV.yaml at 3f46f6e02e11aef3d9707bb2f4661c741df55634 · mobidic/Captain-ACHAB · GitHub

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## WARNING: md5 of EMPTY file = d41d8cd98f00b204e9800998ecf8427e

- name: wwwAchab solo downsampled exome minimal
  # Minimal parameters (= only VCF, 'newHope' mode)
  tags:
    - solo
    - exome
    - downsampled
    - minimal
  command: tests/wwwachab/run_and_specials.sh tests/wwwachab/exome-minimal.params
  files:
    - path: out-test/achab_sheets.tsv
      md5sum: 0425cb6f1116d8f8beb0ae92c6caec0b
    - path: out-ranked/variantS.md5
      md5sum: 6753dc22657e38e7eab965dc8eb57c01
    - path: out-REsorted/variantS.md5
      md5sum: 2869975c2c2b50c85d3ba8880c96f13d

- name: wwwAchab solo downsampled exome prod
  # Full set of parameters used in prod for exome
  tags:
    - solo
    - exome
    - downsampled
    - prod
  command: tests/wwwachab/run_and_specials.sh tests/wwwachab/exome-prod.params
  files:
    - path: out-test/achab_sheets.tsv
      md5sum: 3a05b59da58cf23353507755f0d9e638
    - path: out-ranked/variantS.md5
      md5sum: 1a20655ea62207bdb03ef7edf00ca928
    - path: out-REsorted/variantS.md5
      md5sum: a66fee07384a7c1621a05fd38d4fdd30

- name: wwwAchab trio full exome prod V15
  # Prod with V15 on full exome trio (FE037)
  tags:
    - trio
    - exome
    - full
    - prodV15
  command: tests/wwwachab/run_and_specials.sh tests/wwwachab/trio-prod-v15.params
  files:
    - path: out-test/achab_sheets.tsv
      md5sum: 28459c1936a0dbb701ac09ed88281429
    - path: out-ranked/variantS.md5
      md5sum: 8346c29c780ae6b4e1e09692c8e6b578  # FIXME: Not 100% deterministic yet
    - path: out-REsorted/variantS.md5
      md5sum: 75249c3fff12f3bd8298cf8e9c7b4f5f

- name: wwwAchab trio full exome prod V18
  # Prod with V18 on full exome trio (FE037)
  tags:
    - trio
    - exome
    - full
    - prodV18
  command: tests/wwwachab/run_and_specials.sh tests/wwwachab/trio-prod-v18.params
  files:
    - path: out-test/achab_sheets.tsv
      md5sum: 28459c1936a0dbb701ac09ed88281429
    - path: out-ranked/variantS.md5
      md5sum: 8346c29c780ae6b4e1e09692c8e6b578  # FIXME: Not 100% deterministic yet
    - path: out-REsorted/variantS.md5
      md5sum: 570710fd14ea55bc4890606553654b61  # More vars in DENOVO -> md5 differs from V15

- name: wwwAchab trio full exome prod V19
  # Prod with V19 on full exome trio (FE037)
  tags:
    - trio
    - exome
    - full
    - prodV19
  command: tests/wwwachab/run_and_specials.sh tests/wwwachab/trio-prod-v19.params
  files:
    - path: out-test/achab_sheets.tsv
      md5sum: 28459c1936a0dbb701ac09ed88281429
    - path: out-ranked/variantS.md5
      md5sum: 8346c29c780ae6b4e1e09692c8e6b578  # FIXME: Not 100% deterministic yet
    - path: out-REsorted/variantS.md5
      md5sum: 9c8f2ad05bf01cac2139e6b87d95427e  # Clinvar_PATHO always included (even if high GnomAD) -> md5 differ from V18