Fix CI workflow and add steps to run tests #22
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| workflow_dispatch: | |
| merge_group: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| max-parallel: 4 | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13", "3.14"] | |
| steps: | |
| - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1 | |
| with: | |
| persist-credentials: false | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@61cb8a9741eeb8a550a1b8544337180c0fc8476b # v7.2.0 | |
| id: setup-uv | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: true | |
| cache-python: true | |
| - name: Install dependencies | |
| run: | | |
| uv run python --version | |
| uv pip install -e .[test] | |
| - run: uv run flake8 ./fhir/resources/ | |
| - run: uv run black --check fhir/resources/ | |
| # monthly cache updates | |
| - run: echo "cache_id=$(date --utc '+%m')" >> "$GITHUB_ENV" | |
| - uses: actions/cache@9255dc7a253b0ccc959486e2bca901246202afeb # v5.0.1 | |
| with: | |
| key: fhir-resources-${{ env.cache_id }} | |
| path: .cache | |
| restore-keys: | | |
| fhir-resources- | |
| - name: Run main tests with Python ${{ matrix.python-version }} | |
| run: | | |
| which pytest | |
| uv run pytest tests | |
| - name: Run STU3 tests with Python ${{ matrix.python-version }} | |
| run: | | |
| uv run pytest fhir/resources/STU3/tests | |
| - name: Run R4B tests with Python ${{ matrix.python-version }} | |
| run: | | |
| uv run pytest -s --cov=fhir/resources/R4B/tests -s --tb=native -v --cov-report term-missing --cov-append fhir/resources/R4B/tests | |
| - name: Run R5 tests with Python ${{ matrix.python-version }} | |
| run: | | |
| uv run pytest -s --cov=fhir/resources/tests -s --tb=native -v --cov-report term-missing --cov-append fhir/resources/tests |