Gemfile.lock update

Author: mdorf

Gemfile.lock

@@ -26,7 +26,7 @@ GIT
 
 GIT
   remote: https://github.com/ncbo/ncbo_annotator.git
-  revision: e70c9cceedb2e3fc1ce93867de9d0777323f2146
+  revision: 2d689b10f1be3dc70e890b42c9a62aea8baba5f2
   branch: master
   specs:
     ncbo_annotator (0.0.1)
@@ -37,7 +37,7 @@ GIT
 
 GIT
   remote: https://github.com/ncbo/ontologies_linked_data.git
-  revision: 0083660248b75251857863d08d8b9b8f8aeef343
+  revision: 4e1a2c81a96585ba7a440bf0e7f533ee2ee3c94c
   branch: master
   specs:
     ontologies_linked_data (0.0.1)
@@ -262,10 +262,10 @@ GEM
     http-accept (1.7.0)
     http-cookie (1.1.6)
       domain_name (~> 0.5)
-    i18n (1.15.1)
+    i18n (1.15.2)
       concurrent-ruby (~> 1.0)
     io-console (0.8.2)
-    json (2.19.9)
+    json (2.20.0)
     json-canonicalization (1.0.0)
     json-ld (3.3.2)
       htmlentities (~> 4.3)
@@ -583,9 +583,9 @@ CHECKSUMS
   htmlentities (4.4.2) sha256=bbafbdf69f2eca9262be4efef7e43e6a1de54c95eb600f26984f71d2fe96c5c3
   http-accept (1.7.0) sha256=c626860682bfbb3b46462f8c39cd470fd7b0584f61b3cc9df5b2e9eb9972a126
   http-cookie (1.1.6) sha256=ba4b82be64de61dc281243dac70e3c382c45142f20268ed9276a3670c93feaa9
-  i18n (1.15.1) sha256=505ec5de1f4e6c8a2cb028ef9700ca495f117911643455721dee5abdca797255
+  i18n (1.15.2) sha256=00f9eb62412fe593b2a65a97daa75300d37abb8f7202ec748e94b6d46a9dd1b5
   io-console (0.8.2) sha256=d6e3ae7a7cc7574f4b8893b4fca2162e57a825b223a177b7afa236c5ef9814cc
-  json (2.19.9) sha256=9b9025b7cdddafa38d316eca0b2358488e42d417045c1b90d216a9fefe46b79a
+  json (2.20.0) sha256=9362bc6e55a952b056abf9167cf053358181c904cb70cd6eee0808ea830fc32b
   json-canonicalization (1.0.0) sha256=d4848a8cca7534455c6721f2d9fc9e5e9adca49486864a898810024f67d59446
   json-ld (3.3.2) sha256=b9531893bf5bdc01db428e96953845a23adb1097125ce918ae0f97c4a6e1ab27
   jwt (3.2.0) sha256=5419b1fe37b1da0982bd07051f573a8b8789ab724c2aa7e785e4784a3ed217d7

lib/ncbo_cron/ontology_rank.rb

@@ -48,6 +48,10 @@ def run
           logger.info('Storing rankings in Redis...')
           redis.set(ONTOLOGY_RANK_REDIS_FIELD, Marshal.dump(ontology_rank))
           logger.info('Rankings successfully stored in Redis')
+
+          logger.info('Propagating rankings to Solr term_search...')
+          updated = LinkedData::Services::RankSolrPropagator.new(logger: logger).propagate
+          logger.info("Propagated rankings to Solr for #{updated} ontologies")
         end
 
         logger.info("Finished generating ontology rankings in #{time.round(3)} seconds")

test/test_ontology_rank.rb

@@ -0,0 +1,19 @@
+require_relative 'test_case'
+require 'stringio'
+
+class TestOntologyRankPropagation < TestCase
+  def test_run_propagates_rank_to_solr_after_redis_write
+    rank_job = NcboCron::Models::OntologyRank.new(Logger.new(StringIO.new))
+
+    # Isolate from analytics/UMLS and Redis: stub the computation and the store.
+    rank_job.stubs(:rank_ontologies).returns({ 'BRO' => { bioportalScore: 0.5, umlsScore: 0.0 } })
+    fake_redis = mock('redis')
+    fake_redis.stubs(:set)
+    Redis.stubs(:new).returns(fake_redis)
+
+    # The propagation step must run exactly once.
+    LinkedData::Services::RankSolrPropagator.any_instance.expects(:propagate).once.returns(1)
+
+    rank_job.run
+  end
+end