add a bunch of snaps

Author: d4straub

CHANGELOG.md

@@ -11,7 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
-- [#893](https://github.com/nf-core/ampliseq/pull/893),[#894](https://github.com/nf-core/ampliseq/pull/894) - Template update for nf-core/tools version 3.3.1
+- [#893](https://github.com/nf-core/ampliseq/pull/893),[#896](https://github.com/nf-core/ampliseq/pull/896) - Template update for nf-core/tools version 3.3.1
 
 ### `Dependencies`
 

tests/default.nf.test

@@ -53,7 +53,7 @@ nextflow_pipeline {
                     path("$outputDir/SBDI/event.tsv"),
                     path("$outputDir/vsearch_cluster/ASV_post_clustering_filtered.fna"),
                     path("$outputDir/vsearch_cluster/ASV_post_clustering_filtered.stats.tsv"),
-                    path("$outputDir/vsearch_cluster/ASV_post_clustering_filtered.table.tsv"),
+                    path("$outputDir/vsearch_cluster/ASV_post_clustering_filtered.table.tsv")
                 ).match() }
             )
         }

tests/default.nf.test.snap

@@ -29,7 +29,22 @@ nextflow_pipeline {
                     // All stable path name, with a relative path
                     stable_name,
                     // Manually chosen files for content checks
-                    stable_path
+                    path("$outputDir/overall_summary.tsv"),
+                    path("$outputDir/asv_length_filter/").list(),
+                    path("$outputDir/barrnap/rrna.arc.gff"),
+                    path("$outputDir/barrnap/rrna.bac.gff"),
+                    path("$outputDir/barrnap/rrna.euk.gff"),
+                    path("$outputDir/barrnap/rrna.mito.gff"),
+                    path("$outputDir/cutadapt/cutadapt_summary.tsv"),
+                    path("$outputDir/dada2/ASV_seqs.fasta"),
+                    path("$outputDir/dada2/ASV_table.tsv"),
+                    path("$outputDir/dada2/DADA2_stats.tsv"),
+                    path("$outputDir/dada2/DADA2_table.rds"),
+                    path("$outputDir/dada2/DADA2_table.tsv"),
+                    path("$outputDir/qiime2/representative_sequences/descriptive_stats.tsv"),
+                    path("$outputDir/qiime2/representative_sequences/seven_number_summary.tsv"),
+                    path("$outputDir/multiqc/multiqc_data/multiqc_general_stats.txt"),
+                    path("$outputDir/multiqc/multiqc_data/multiqc_cutadapt.txt")
                 ).match() },
             )
         }