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Update star nf-test snapshots
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Lines changed: 113 additions & 4 deletions

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tests/star.nf.test.snap

Lines changed: 113 additions & 4 deletions
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"content": [
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{
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"BAMTOOLS_FILTER": {
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"samtools": "1.15.1",
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"bamtools": "2.5.2"
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},
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"BAM_REMOVE_ORPHANS": {
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"samtools": "1.15.1"
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},
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"BEDTOOLS_GENOMECOV": {
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"bedtools": "2.31.1",
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"sort": 9.5
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},
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"DEEPTOOLS_COMPUTEMATRIX_REFERENCE_POINT": {
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"deeptools": "3.5.5"
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},
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"DEEPTOOLS_COMPUTEMATRIX_SCALE_REGIONS": {
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"deeptools": "3.5.5"
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},
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"DEEPTOOLS_PLOTHEATMAP": {
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"deeptools": "3.5.5"
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},
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"DEEPTOOLS_PLOTPROFILE": {
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"deeptools": "3.5.5"
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},
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"DESEQ2_QC": {
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"r-base": "4.0.3",
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"bioconductor-deseq2": "1.28.0"
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},
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"FASTQC": {
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"fastqc": "0.12.1"
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},
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"FRIP_SCORE": {
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"bedtools": "2.30.0",
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"samtools": "1.15.1"
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},
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"HOMER_ANNOTATEPEAKS": {
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"homer": 4.11
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},
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"IGV": {
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"python": "3.8.3"
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},
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"MACS3_CALLPEAK": {
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"macs3": "3.0.1"
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},
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"MACS3_CONSENSUS": {
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"python": "3.10.0",
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"r-base": "4.1.1"
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},
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"MERGED_LIBRARY_ATAQV_ATAQV": {
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"ataqv": "1.3.1"
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},
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"MERGED_LIBRARY_ATAQV_MKARV": {
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"ataqv": "1.3.1"
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},
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"MERGED_LIBRARY_DEEPTOOLS_PLOTFINGERPRINT": {
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"deeptools": "3.5.5"
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},
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"MERGED_LIBRARY_PICARD_COLLECTMULTIPLEMETRICS": {
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"picard": "3.0.0"
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},
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"MULTIQC_CUSTOM_PEAKS": {
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"sed": 4.7
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},
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"PICARD_MARKDUPLICATES": {
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"picard": "3.1.1"
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},
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"PICARD_MERGESAMFILES_LIBRARY": {
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"picard": "3.4.0"
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},
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"PICARD_MERGESAMFILES_REPLICATE": {
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"picard": "3.4.0"
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},
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"PLOT_HOMER_ANNOTATEPEAKS": {
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"r-base": "4.0.3"
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},
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"PLOT_MACS3_QC": {
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"r-base": "4.0.3"
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},
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"SAMPLESHEET_CHECK": {
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"python": "3.8.3"
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},
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"SAMTOOLS_FLAGSTAT": {
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"samtools": "1.19.2"
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},
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"SAMTOOLS_IDXSTATS": {
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"samtools": "1.19.2"
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},
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"SAMTOOLS_INDEX": {
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"samtools": "1.19.2"
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},
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"SAMTOOLS_SORT": {
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"samtools": "1.19.2"
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},
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"SAMTOOLS_STATS": {
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"samtools": "1.19.2"
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},
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"STAR_ALIGN": {
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"star": "2.6.1d"
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},
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"SUBREAD_FEATURECOUNTS": {
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"subread": "2.0.1"
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},
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"TRIMGALORE": {
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"trimgalore": "0.6.10"
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},
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"UCSC_BEDGRAPHTOBIGWIG": {
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"ucsc": 445
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},
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"Workflow": {
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"nf-core/atacseq": "v2.2.0dev"
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}
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},
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[
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"fastqc",
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"multiqc/broad_peak/multiqc_plots/svg/mqc_samtools_alignment_plot_1_pc.svg",
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"multiqc/broad_peak/multiqc_report.html",
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"pipeline_info",
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"pipeline_info/nf_core_chipseq_software_mqc_versions.yml",
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"pipeline_info/nf_core_atacseq_software_mqc_versions.yml",
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"pipeline_info/samplesheet.valid.csv",
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"star",
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"star/library",
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],
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"meta": {
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"nf-test": "0.9.3",
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"nextflow": "25.04.7"
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"nextflow": "26.04.1"
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},
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"timestamp": "2026-03-23T12:10:00.120333021"
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"timestamp": "2026-05-20T13:22:07.297454404"
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},
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"star with stub": {
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"content": [

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