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[tracker] new tools #1022

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@dialvarezs
Issue Tool Status Notes nf-core module exists?
#587 CoverM In progress (#997) Contig and bin coverage Yes: coverm/contig, coverm/genome
#822 hostile In progress (#857) Alternative host read removal tool Yes: hostile/clean, hostile/fetch
#413 dRep Open Bin dereplication Yes: drep/compare, drep/dereplicate
#1023 myloasm Open Long-read metagenome assembler Yes: myloasm
#624 pyrodigal Open Alternative to Prodigal Yes: pyrodigal
#714 binette Open Alternative bin refinement tool No
#1024 skDER / CiDDER Open Bin dereplication No
#1033 fastplong Open Long read QC Yes: fastplong
#346 Bakta Open Alternative to Prokka Yes: bakta/bakta, bakta/baktadbdownload
#980 DeepMAsED In progress (#1051) Contig QC / misassembly estimation tool Yes
#796 fairy Open Fast co-coverage estimation Yes: fairy/sketch, fairy/coverage
#722 Taxometer Open Taxonomic classification for contigs No
#650 CarpeDeam Open Ancient-DNA-aware assembler No
#609 Sourmash Open Genome taxonomic classification Yes: sourmash/compare, sourmash/gather, sourmash/index, sourmash/sketch, sourmash/taxannotate
#580 StrainXpress Open Strain-aware assembler No
#1040 Polypolish Open Short-read polishing of nanopore assemblies Yes: polypolish/polish

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