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Pull requests: nf-core/raredisease

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Pull requests list

Update saltshaker reports
#856 opened May 25, 2026 by ieduba Contributor Loading…
12 tasks
fix(postprocess_mt_calls): split multiallelics after bcftools merge
#855 opened May 25, 2026 by ramprasadn Collaborator Loading…
12 tasks
Feat/add optional filter params
#828 opened Apr 30, 2026 by krbe9202 Loading…
8 of 12 tasks
ED add stub tests to subworkflows
#820 opened Apr 22, 2026 by emmadizdarevic Contributor Loading…
1 of 12 tasks
Add support for variant scoring by MIVMIR, GICAM models
#812 opened Apr 16, 2026 by torbjorgen Loading…
18 tasks done
Add annotate_cadd subworkflow test
#794 opened Mar 24, 2026 by peterpru Member Draft
12 tasks
Add GATK contamination check to complement VerifyBamID2
#758 opened Dec 15, 2025 by dorotejavujinovic Loading…
5 of 8 tasks
Add Parabricks DeepVariant module
#724 opened Sep 19, 2025 by HudoGriz Loading…
3 of 12 tasks
Deepvariant subworkflow (issue #614)
#651 opened Dec 6, 2024 by fa2k Contributor Draft
7 tasks done
ProTip! Exclude everything labeled bug with -label:bug.