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Bump tj-actions/changed-files from 42 to 46 in /.github/workflows#135

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Bump tj-actions/changed-files from 42 to 46 in /.github/workflows#135
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@dependabot dependabot Bot commented on behalf of github Apr 30, 2026

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Bumps tj-actions/changed-files from 42 to 46.

Release notes

Sourced from tj-actions/changed-files's releases.

v46

Changes in v46.0.5

What's Changed

Full Changelog: tj-actions/changed-files@v46...v46.0.5


Changes in v46.0.4

What's Changed

Full Changelog: tj-actions/changed-files@v46...v46.0.4


Changes in v46.0.3

What's Changed

Full Changelog: tj-actions/changed-files@v46...v46.0.3


Changes in v46.0.2

What's Changed

... (truncated)

Changelog

Sourced from tj-actions/changed-files's changelog.

Changelog

47.0.6 - (2026-04-18)

🔄 Update

  • Updated README.md (#2817)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@​users.noreply.github.com> Co-authored-by: Tonye Jack jtonye@ymail.com (c23d52b) - (github-actions[bot])

⚙️ Miscellaneous Tasks

  • deps: Bump lodash from 4.17.23 to 4.18.1 (#2837) (9426d40) - (dependabot[bot])
  • deps: Bump peter-evans/create-pull-request from 8.1.0 to 8.1.1 (#2843) (32de080) - (dependabot[bot])
  • deps: Bump actions/upload-artifact from 7.0.0 to 7.0.1 (#2844) (2487d12) - (dependabot[bot])
  • deps-dev: Bump @​types/node from 25.5.0 to 25.6.0 (#2846) (cef85a3) - (dependabot[bot])
  • deps-dev: Bump prettier from 3.8.1 to 3.8.3 (#2848) (7b082de) - (dependabot[bot])
  • deps: Bump github/codeql-action from 4.35.1 to 4.35.2 (#2849) (07224ca) - (dependabot[bot])
  • deps-dev: Bump jest from 30.2.0 to 30.3.0 (#2822) (2bb1357) - (dependabot[bot])
  • deps: Bump nrwl/nx-set-shas from 4.4.0 to 5.0.1 (#2829) (cc98117) - (dependabot[bot])
  • deps: Bump yaml from 2.8.2 to 2.8.3 (#2830) (786e421) - (dependabot[bot])
  • deps-dev: Bump eslint-plugin-jest from 29.15.0 to 29.15.1 (#2831) (726b41b) - (dependabot[bot])
  • deps: Bump github/codeql-action from 4.32.6 to 4.35.1 (#2834) (2c3585e) - (dependabot[bot])
  • deps: Bump actions/download-artifact from 8.0.0 to 8.0.1 (#2824) (3d37a7f) - (dependabot[bot])
  • deps-dev: Bump @​types/node from 25.3.5 to 25.5.0 (#2825) (445b0eb) - (dependabot[bot])
  • deps: Bump github/codeql-action from 4.32.5 to 4.32.6 (#2819) (4f892cd) - (dependabot[bot])
  • deps-dev: Bump @​types/node from 25.3.3 to 25.3.5 (#2820) (6118651) - (dependabot[bot])
  • deps: Bump actions/setup-node from 6.2.0 to 6.3.0 (#2818) (e517d7a) - (dependabot[bot])

⬆️ Upgrades

  • Upgraded to v47.0.5 (#2816)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@​users.noreply.github.com> Co-authored-by: Tonye Jack jtonye@ymail.com (4750530) - (github-actions[bot])

47.0.5 - (2026-03-03)

🔄 Update

  • Updated README.md (#2805)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@​users.noreply.github.com> (35dace0) - (github-actions[bot])

  • Updated README.md (#2803)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@​users.noreply.github.com> Co-authored-by: Tonye Jack jtonye@ymail.com (9ee99eb) - (github-actions[bot])

⚙️ Miscellaneous Tasks

... (truncated)

Commits
  • ed68ef8 chore(deps): bump yaml from 2.7.0 to 2.7.1 (#2520)
  • a7bc14b chore(deps-dev): bump typescript from 5.8.2 to 5.8.3 (#2516)
  • 3d751f6 chore(deps-dev): bump @​types/node from 22.13.11 to 22.14.0 (#2517)
  • e2fda4e chore(deps-dev): bump eslint-plugin-prettier from 5.2.3 to 5.2.6 (#2519)
  • 0bed1b1 chore(deps-dev): bump ts-jest from 29.2.6 to 29.3.1 (#2518)
  • 6802458 chore(deps): bump github/codeql-action from 3.28.12 to 3.28.15 (#2530)
  • cf2e39e chore(deps): bump tj-actions/branch-names from 8.0.1 to 8.1.0 (#2521)
  • 6abeaa5 chore(deps): bump tj-actions/verify-changed-files from 20.0.1 to 20.0.4 (#2523)
  • 6f67ee9 Upgraded to v46.0.4 (#2511)
  • 6cb76d0 fix: bug modified_keys and changed_key outputs not set when no changes detect...
  • Additional commits viewable in compare view

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Bumps [tj-actions/changed-files](https://github.com/tj-actions/changed-files) from 42 to 46.
- [Release notes](https://github.com/tj-actions/changed-files/releases)
- [Changelog](https://github.com/tj-actions/changed-files/blob/main/HISTORY.md)
- [Commits](tj-actions/changed-files@v42...v46)

---
updated-dependencies:
- dependency-name: tj-actions/changed-files
  dependency-version: '46'
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Apr 30, 2026
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@maxulysse maxulysse closed this Apr 30, 2026
@dependabot @github

dependabot Bot commented on behalf of github Apr 30, 2026

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OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

@dependabot dependabot Bot deleted the dependabot/github_actions/dot-github/workflows/tj-actions/changed-files-46 branch April 30, 2026 13:22
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