Hi,
I hope you are having a nice start of the year!
I am working with CDS-only genomes (cds concatenated, in fasta format, so without intergenic regions).
I already aligned, ran gubbins on them but I wanted to make sure it was okay to use cds-only genomes (hoping it does create biases in recombination detection as it is not a proper whole genomes alignment).
Thank you a lot in advance,
Cheers,
Juliette
Hi,
I hope you are having a nice start of the year!
I am working with CDS-only genomes (cds concatenated, in fasta format, so without intergenic regions).
I already aligned, ran gubbins on them but I wanted to make sure it was okay to use cds-only genomes (hoping it does create biases in recombination detection as it is not a proper whole genomes alignment).
Thank you a lot in advance,
Cheers,
Juliette