Merge pull request #5600 from nodetool-ai/claude/codebase-audit-web-packages-riugl4

refactor: remove duplicated and dead code found by the codebase slop audit

Author: georgi

docs/cli.md

@@ -1001,6 +1001,10 @@ Query job status and results. Reads the local database by default.
 - `--limit <n>` — max results (default: `100`).
 - `--json` — output as JSON.
 
+`--json` returns the same declared row shape whether the command read the local
+database or a server. The local read used to dump every column, including a
+job's whole `graph` and `logs`.
+
 **Examples:**
 
 ```bash
@@ -1596,8 +1600,8 @@ The file lives in the user config directory, not the working directory:
 than guessing the path.
 
 **Subcommands:** `init`, `add`, `edit`, `list`, `show`, `plan`, `apply`,
-`status`, `logs`, `destroy`, plus the remote groups `workflows`, `database`,
-`collections` and the `users-*` verbs below.
+`status`, `logs`, `destroy`, plus the remote group `workflows` and the
+`users-*` verbs below.
 
 **Options:**
 
@@ -1645,33 +1649,22 @@ create it.`
 The full server walkthrough is [Deployment](deployment.md) and
 [Self-Hosted Deployment](self-hosted-deployment.md).
 
-#### Remote workflows, rows, and collections
+#### Remote workflows
 
-Once a target is up, three groups act on it over the admin API rather than on
-the local database:
+Once a target is up, `workflows` acts on the deployment's `/api/workflows`
+routes rather than on the local database:
 
 ```bash
-# Push a local workflow and everything it references, then run it there
+# Push a local workflow to the deployment, then run it there
 nodetool deploy workflows sync my-server <workflow_id>
 nodetool deploy workflows list my-server
 nodetool deploy workflows run my-server <workflow_id> -p prompt="a red fox"
 nodetool deploy workflows delete my-server <workflow_id>
-
-# Read, upsert, and delete a single remote DB row
-nodetool deploy database get my-server users alice
-nodetool deploy database save my-server users '{"id":"alice","role":"admin"}'
-nodetool deploy database delete my-server users alice
-
-# Push a local RAG collection to the deployment
-nodetool deploy collections sync my-server my_docs
 ```
 
-`workflows run` takes `-p, --param <k=v>`, repeatable. `<table>` is passed
-through to the deployment, which resolves it against its own adapters — the
-valid names are the remote server's tables, not a list this CLI holds. `save`
-takes the row as a positional JSON string, and `get` on a row that is not there
-answers `404`. `collections sync` uploads in batches of `--batch-size`,
-default `100`.
+`workflows run` takes `-p, --param <k=v>`, repeatable. `sync` pushes the
+workflow row itself; the assets and models its nodes reference must already be
+present on the target.
 
 #### API users on the deployment
 
@@ -1686,7 +1679,7 @@ nodetool deploy users-remove my-server alice
 ```
 
 Every subcommand that touches a live deployment — the `users-*` verbs and the
-three remote groups above — sends an admin bearer token. `--token <token>`
+`workflows` group above — sends an admin bearer token. `--token <token>`
 passes it explicitly and wins over `NODETOOL_ADMIN_TOKEN`; with neither, an
 interactive shell prompts and a non-interactive one exits `1`.
 

docs/developer/custom-nodes-guide.md

@@ -438,10 +438,12 @@ Always prefer `getSecret` over `process.env` — secrets are user-scoped and may
 const resp = await context.httpGet("https://api.example.com/data", {
   headers: { Authorization: `Bearer ${apiKey}` }
 });
-await context.httpPost(url, { json: { foo: 1 } });
-// Also: httpPut, httpPatch, httpDelete, httpHead
+await context.httpRequestWithRetries("POST", url, { json: { foo: 1 } });
 ```
 
+`httpGet` is the GET shorthand. Every other verb goes through
+`httpRequestWithRetries`, which carries the shared retry and backoff policy.
+
 ### Cache
 
 The per-job cache is exposed at `context.cache`. Both methods are **async**;

docs/failure-mode-roadmap.md

@@ -170,8 +170,9 @@ Run the case on Windows; a Windows-style string on macOS is not sufficient.
 
 ### 7C. Dialog containment audit
 
-`PositionedDialog` already clamps to the viewport. Enumerate other dialog
-primitives and direct users in a checked-in audit with a non-zero count. A
+No dialog primitive clamps to the viewport today — `PositionedDialog`, which
+did, is deleted. Enumerate the dialog primitives and direct users in a
+checked-in audit with a non-zero count. A
 dialog fails the audit when its rendered bounds extend outside a 600 x 600 px
 viewport or its content cannot scroll into view. Migrate failing callers and
 add one 600 x 600 px test per migrated primitive.

docs/plans/ui-primitives-overhaul.md

@@ -86,7 +86,6 @@ into the Fix 1 sweep):
 | `WarningBanner.tsx:73` | `border-radius: 8px` |
 | `Breadcrumbs.tsx:56` | `border-radius: 4px` |
 | `ZoomControls.tsx:34` | `minWidth: "45px"` — off-grid |
-| `InfoTooltip.tsx:77` | `font-size: 14px` — off the type scale |
 | `NotificationBadge.tsx:56` | `font-size: 10px` — off the type scale |
 
 ### 2.2 Unrelated defaults across primitives
@@ -416,7 +415,7 @@ props); every existing screen improves without migration. Each PR:
    `SelectField`, `SearchInput`, `TagInput`.
 3. Off-grid sweep: `Slider`, `NodeSlider`, `Panel` padding, plus the ⚠ table
    in 2.1 (TabGroup, Chip, UndoRedoButtons, MenuItemPrimitive,
-   MobileBottomSheet, WarningBanner, Breadcrumbs, ZoomControls, InfoTooltip,
+   MobileBottomSheet, WarningBanner, Breadcrumbs, ZoomControls,
    NotificationBadge).
 4. Add a `DesignTokens.Control` Storybook story (heights/paddings/radius
    swatches) next to the existing `DesignTokens.*` stories.

docs/url-egress-inventory.md

@@ -96,6 +96,7 @@ Everything here fetches a URL somebody else chose, through the protected fetch.
 | OpenAI media input | `packages/llm-nodes/src/nodes/openai.ts` | workflow |
 | Together asset resolution | `packages/together-nodes/src/together-base.ts` | workflow |
 | AtlasCloud media pass-through | `packages/atlascloud-nodes/src/atlascloud-factory.ts` | workflow |
+| AtlasCloud prediction downloads | `packages/runtime/src/providers/atlascloud-transport.ts` | provider response |
 | KIE result downloads | `packages/kie-nodes/src/kie-base.ts` | provider response |
 | Topaz result downloads | `packages/topaz-nodes/src/topaz-base.ts` | provider response |
 | MiniMax audio / file downloads | `packages/minimax-nodes/src/minimax-base.ts` | provider response |