[CLEANUP] Update workflows and environment #86
Workflow file for this run
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| name: Run tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - '**.py' | |
| - '**.ipynb' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - '**.py' | |
| - '**.ipynb' | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.10", "3.12"] | |
| fail-fast: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: environment.yml | |
| init-shell: bash | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| channel_priority: strict | |
| cache-environment: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Check Package Installation | |
| shell: bash -l {0} | |
| run: | | |
| micromamba run -n TEST micromamba env list | |
| micromamba run -n TEST micromamba list | |
| micromamba run -n TEST python -m pip check | |
| - name: Install package (editable) | |
| shell: bash -l {0} | |
| run: | | |
| micromamba run -n TEST python -m pip install --upgrade pip | |
| micromamba run -n TEST python -m pip install -e . --no-deps --force-reinstall | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| micromamba run -n TEST python -m pytest --cov=seagliderOG1 --cov-report term-missing tests/ |