I hope this message finds you well. I am currently working with GLIMPSE2 and would like to ask for clarification regarding the imputation of sex chromosomes.
Specifically, I would like to know: How can I properly impute chromosome X and chromosome Y using GLIMPSE2, given the complexities of pseudoautosomal regions (PARs) on chrX and the lack of a genetic map for chrY?
Thank you
I hope this message finds you well. I am currently working with GLIMPSE2 and would like to ask for clarification regarding the imputation of sex chromosomes.
Specifically, I would like to know: How can I properly impute chromosome X and chromosome Y using GLIMPSE2, given the complexities of pseudoautosomal regions (PARs) on chrX and the lack of a genetic map for chrY?
Thank you