fix the new metadata extraction tests

Author: syphax-bouazzouni

bin/owlapi-wrapper-1.4.3.jar

@@ -56,7 +56,7 @@ version:
     "PAV: The version number of a resource.",
     "DOAP: A project release",
     "SCHEMA: The version of the CreativeWork embodied by a specified resource."]
-  extractedMetadata: true
+  extractedMetadata: false
   metadataMappings: [ "omv:version", "mod:version", "owl:versionInfo", "pav:version", "doap:release", "schema:version", "oboInOwl:data-version", "oboInOwl:version" ]
 
 #Status

config/schemes/ontology_submission.yml

@@ -13,7 +13,7 @@ class RDFFileNotGeneratedException < Parser::ParserException
 
     class OWLAPICommand
       def initialize(input_file, output_repo, opts = {})
-        @owlapi_wrapper_jar_path = LinkedData.bindir + "/owlapi-wrapper-1.4.2.jar"
+        @owlapi_wrapper_jar_path = LinkedData.bindir + "/owlapi-wrapper-1.4.3.jar"
         @input_file = input_file
         @output_repo = output_repo
         @master_file = opts[:master_file]

lib/ontologies_linked_data/parser/owlapi.rb

@@ -153,7 +153,7 @@ def test_ontology_properties
     ont.bring(:submissions)
     sub = ont.submissions[0]
     props = ont.properties()
-    assert_equal 85, props.length
+    assert_equal 82, props.length
 
     # verify sorting
     assert_equal "http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#AlgorithmPurpose", props[0].id.to_s
@@ -192,7 +192,7 @@ def test_ontology_properties
 
     # test property roots
     pr = ont.property_roots(sub, extra_include=[:hasChildren, :children])
-    assert_equal 64, pr.length
+    assert_equal 61, pr.length
 
     # verify sorting
     assert_equal "http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#AlgorithmPurpose", pr[0].id.to_s

test/models/test_ontology.rb

@@ -289,13 +289,13 @@ def test_submission_parse
     unless ENV["BP_SKIP_HEAVY_TESTS"] == "1"
       submission_parse("MCCLTEST", "MCCLS TEST",
                          "./test/data/ontology_files/CellLine_OWL_BioPortal_v1.0.owl", 11,
-                         process_rdf: true, extract_metadata: false)
+                         process_rdf: true, extract_metadata: true)
 
       sub = LinkedData::Models::OntologySubmission.where(ontology: [acronym: "MCCLTEST"],
                                                          submissionId: 11)
                                                   .include(:version)
                                                   .first
-      assert sub.version == "3.0"
+      assert_equal sub.version, "3.0"
     end
 
     #This one has resources wih accents.
@@ -448,7 +448,7 @@ def test_index_properties
                      "./test/data/ontology_files/BRO_v3.5.owl", 1,
                      process_rdf: true, extract_metadata: false, index_properties: true)
     res = LinkedData::Models::Class.search("*:*", {:fq => "submissionAcronym:\"BRO\"", :start => 0, :rows => 80}, :property)
-    assert_equal 83 , res["response"]["numFound"]
+    assert_equal 80 , res["response"]["numFound"]
     found = 0
 
     res["response"]["docs"].each do |doc|