foerstner-lab repositories

32 repositories

Training_Material-Data_Visualisation
Public
Training Material for teaching Data Visualisation
oer data-visualisation data-viz
oer data-visualisation data-viz plotting openeducation plotting-in-python
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Jun 8, 2026Jun 8, 2026
GRADitude
Public
GRADitude - The GRAD-seq data analysis tool
Python
•
Other
•0•1•6•1•Updated Jun 4, 2026Jun 4, 2026
Bits_and_pieces_for_the_carpentries_workshops
Public archive
Bits and pieces for the carpentries workshops
hacktoberfest
hacktoberfest
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•27•17•7•0•Updated May 24, 2026May 24, 2026
GuaRNAtee
Public
Genome-wide Anomaly-based sRNA Transcripts Extremities Extraction
Python
•
MIT License
•0•0•1•0•Updated Apr 15, 2026Apr 15, 2026
Training_Material-Knowledge_Graphs_and_Linked_Open_Data
Public
Training Material "Knowledge Graphs and Linked Open Data"
Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Feb 7, 2026Feb 7, 2026
InteractOA
Public
InteractOA
HTML
•
Other
•0•1•0•0•Updated Nov 17, 2025Nov 17, 2025
READemption
Public
A pipeline for the computational evaluation of RNA-Seq data
bioinformatics rna-seq
bioinformatics rna-seq
Python
•
Other
•20•40•23•2•Updated Sep 10, 2024Sep 10, 2024
patent_publication_links
Public
code for the paper "Knowledge transfer from science to economy illustrated via patent - publication pairs: reducing ambiguities with word embeddings and refer…
Python
•1•0•0•0•Updated Aug 21, 2024Aug 21, 2024
2024-Course_Data_Visualization_Master_Digital_Sciences
Public
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•8•1•0•0•Updated Aug 2, 2024Aug 2, 2024
2024-06-10-Machine_Learning_as_part_of_an_EBI_Systems_Biology_course
Public
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Jun 10, 2024Jun 10, 2024
NSLP2024-FoRC
Public
Jupyter Notebook
•1•2•0•0•Updated May 25, 2024May 25, 2024
Training_Material-Machine_Learning_and_Deep_Learning_for_the_Life_Sciences
Public
Traning Material for Machine Learning and Deep Learning for the Life Sciences
machine-learning bioinformatics deep-learning
machine-learning bioinformatics deep-learning
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Apr 13, 2024Apr 13, 2024
Lab_Knowledge_Base
Public
A small collection of useful tutorials and links
hacktoberfest
hacktoberfest
Jupyter Notebook
•
Other
•8•15•0•0•Updated Apr 13, 2024Apr 13, 2024
2024-04-08-Workshop_New-Delhi-Omics-data-analytics-and-AI-approaches
Public
2024-04-08-Workshop New-Delhi Omics data analytics and AI approaches
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Apr 11, 2024Apr 11, 2024
Publication_list
Public
Publication list of the research group lead by Konrad Förstner
Python
•2•0•6•0•Updated Mar 5, 2024Mar 5, 2024
gffpandas
Public
Parse GFF3 into Pandas dataframes
Python
•
ISC License
•9•31•8•1•Updated Feb 21, 2024Feb 21, 2024
2023-10-23-Machine_Learning_as_part_of_an_EBI_Systems_Biology_course
Public
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Oct 27, 2023Oct 27, 2023
Code_of_Conduct
Public
Code of conduct o the Data Science and Service Group at ZB MED
0•0•0•0•Updated Sep 11, 2023Sep 11, 2023
data_visualization_coursework_template
Public
0•0•0•0•Updated Apr 17, 2023Apr 17, 2023
2022-10-19-DIS18_a_b_Praxisprojekt_I-Grundlagen_und_Anweldungen_von_Knowledge_Graphs
Public
DIS18 a b Praxisprojekt I - Grundlagen und Anweldungen von Knowledge Graphs
Creative Commons Zero v1.0 Universal
•9•1•0•3•Updated Mar 29, 2023Mar 29, 2023
CoxBase-Webapp
Public
A central platform for Coxiella typing data management
bioinformatics webapp
bioinformatics webapp
JavaScript
•
ISC License
•3•1•0•3•Updated Mar 25, 2023Mar 25, 2023
sRNA_Interactions_to_Wikidata_Importer
Public
A tool to import small RNA interactions from database dumps into Wikidata
Python
•
Other
•0•1•0•0•Updated Feb 14, 2023Feb 14, 2023
GFF_to_Wikidata_importer
Public
Tool to import genomic annotations from GFF files into Wikidata
Python
•
Other
•0•0•0•0•Updated Feb 14, 2023Feb 14, 2023
2022-12-05-Workshop-Einfuehrung_in_das_maschinelle_Lernen_fuer_BibliothekarInnen
Public
ZBIW Workshop Einführung in das maschinelle Lernen für BibliothekarInnen
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•1•0•0•0•Updated Dec 6, 2022Dec 6, 2022
SSH_tutorial
Public
SSH tutorial
ssh oer
ssh oer
Makefile
•7•1•0•0•Updated Aug 15, 2022Aug 15, 2022
HiCsuntdracones
Public
HiC sunt dracones - or HiCDS in short - Your little helper for the HiC analysis
visualization cli bioinformatics
visualization cli bioinformatics hi-c hic
Python
•
ISC License
•1•1•18•1•Updated Jul 13, 2022Jul 13, 2022
2022-07-04-Supervised_Machine_Learning_as_part_of_an_EBI_Systems_Biology_course
Public
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Jul 5, 2022Jul 5, 2022
2021-08-26-Visualisation_basics_for_data_exploration_and_communication
Public
Visualization basics for data exploration and communication
Jupyter Notebook
•0•0•0•0•Updated Aug 26, 2021Aug 26, 2021
2021-06-21-Supervised_Machine_Learning_as_part_of_an_EBI_Systems_Biology_course
Public
Session "Supervised Machine Learning" as part of the EBI cours "Systems Biology - From large data sets to biological insight" 2021
Jupyter Notebook
•
Creative Commons Attribution 4.0 International
•2•2•0•0•Updated Aug 18, 2021Aug 18, 2021
TIPlib
Public
TAKE IT PERSONALLY (TIP) - A Python library for data enrichment for infometrical applications
Python
•
Other
•1•4•1•1•Updated Dec 11, 2019Dec 11, 2019

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Förstner Lab

All

32 repositories

Training_Material-Data_Visualisation

GRADitude

Bits_and_pieces_for_the_carpentries_workshops

GuaRNAtee

Training_Material-Knowledge_Graphs_and_Linked_Open_Data

InteractOA

READemption

patent_publication_links

2024-Course_Data_Visualization_Master_Digital_Sciences

2024-06-10-Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

NSLP2024-FoRC

Training_Material-Machine_Learning_and_Deep_Learning_for_the_Life_Sciences

Lab_Knowledge_Base

2024-04-08-Workshop_New-Delhi-Omics-data-analytics-and-AI-approaches

Publication_list

gffpandas

2023-10-23-Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

Code_of_Conduct

data_visualization_coursework_template

2022-10-19-DIS18_a_b_Praxisprojekt_I-Grundlagen_und_Anweldungen_von_Knowledge_Graphs

CoxBase-Webapp

sRNA_Interactions_to_Wikidata_Importer

GFF_to_Wikidata_importer

2022-12-05-Workshop-Einfuehrung_in_das_maschinelle_Lernen_fuer_BibliothekarInnen

SSH_tutorial

HiCsuntdracones

2022-07-04-Supervised_Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

2021-08-26-Visualisation_basics_for_data_exploration_and_communication

2021-06-21-Supervised_Machine_Learning_as_part_of_an_EBI_Systems_Biology_course

TIPlib

Repositories list

32 repositories