Repositories list

• iSEE

  Public
  R/shiny interface for interactive visualization of data in SummarizedExperiment objects

  visualizationguishiny+ 8

  visualizationguishinyclusteringgene-expressionfeature-extractiontranscriptomicssingle-cellhacktoberfestdimension-reduction+ 1

  R

  •

  Other

  •4545 forks•231231 stars•3131 issues•22 pull requests•Updated Jul 13, 2026Jul 13, 2026

• iSEEid

  Public
  R

  •

  Other

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• iSHOWiSEE

  Public
  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 22, 2026May 22, 2026

• iSEEu

  Public
  The iSEE Universe

  hacktoberfest

  hacktoberfest

  R

  •

  MIT License

  •77 forks•99 stars•11 issue•22 pull requests•Updated Dec 1, 2025Dec 1, 2025

• iSEE.github.io

  Public
  Quarto website

  bioconductorhacktoberfestisee

  bioconductorhacktoberfestisee

  CSS

  •00 forks•00 stars•2323 issues•00 pull requests•Updated Nov 15, 2025Nov 15, 2025

• iSEEWorkshopEuroBioc2025

  Public
  Workshop on iSEE for EuroBioc2025

  TeX

  •

  Other

  •11 fork•11 star•00 issues•00 pull requests•Updated Oct 2, 2025Oct 2, 2025

• iUSEiSEE

  Public
  A workshop to learn how to use the iSEE package

  TeX

  •

  Other

  •00 forks•11 star•00 issues•11 pull request•Updated Oct 1, 2025Oct 1, 2025

• shinylive-iSEE

  Public
  Demonstration of shinylive for running iSEE

  R

  •00 forks•11 star•11 issue•00 pull requests•Updated Jun 1, 2025Jun 1, 2025

• iSEEhub

  Public
  Custom landing page for iSEE and the Bioconductor ExperimentHub

  bioconductorhacktoberfestisee+ 1

  bioconductorhacktoberfestiseebioconductor-package

  R

  •00 forks•33 stars•00 issues•00 pull requests•Updated Feb 13, 2025Feb 13, 2025

• iSEEde

  Public
  iSEE extension for panels related to differential expression analysis

  bioconductorhacktoberfestiseeu

  bioconductorhacktoberfestiseeu

  R

  •11 fork•11 star•44 issues•00 pull requests•Updated Nov 3, 2024Nov 3, 2024

• iSEEhex

  Public
  iSEE extension for summarising data points in hexagonal bins

  bioconductorshiny-riseeu

  bioconductorshiny-riseeu

  R

  •00 forks•00 stars•22 issues•00 pull requests•Updated Oct 18, 2024Oct 18, 2024

• iSEEindex

  Public
  iSEE extension for a landing page to a custom collection of data sets

  bioconductorhacktoberfest

  bioconductorhacktoberfest

  R

  •66 forks•22 stars•33 issues•00 pull requests•Updated Oct 18, 2024Oct 18, 2024

• iSEEpathways

  Public
  iSEE extension for panels related to pathway analysis

  bioconductorhacktoberfestisee+ 1

  bioconductorhacktoberfestiseeiseeu

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 16, 2024Oct 16, 2024

• iSEEverse

  Public
  Easily install and load the entire iSEEverse

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2024Sep 11, 2024

• iSEEtheTeam

  Public
  R

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 6, 2024Sep 6, 2024

• iSEEDemoEuroBioC2024

  Public
  Package demo for the European Bioconductor Meeting 2024 (Oxford, UK)

  workshopbioconductor

  workshopbioconductor

  CSS

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 5, 2024Sep 5, 2024

• awesome-isee-apps

  Public
  List of known iSEE apps publicly deployed

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2024Apr 9, 2024

• iSEElogin

  Public
  iSEE extension for a landing page presenting a login form

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2024Apr 8, 2024

• usage

  Public
  Usage statistics

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 21, 2023Nov 21, 2023

• iSEEdemo

  Public
  Dockerfile

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 14, 2023Nov 14, 2023

• iSEETheBook

  Public
  bioconductorisee

  bioconductorisee

  TeX

  •00 forks•00 stars•11 issue•00 pull requests•Updated Oct 25, 2023Oct 25, 2023

• iSEEDemoEuroBioC2023

  Public
  iSEE package demo at EuroBioC2023

  Dockerfile

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 12, 2023Sep 12, 2023

• shinyappsio-iSEEindex-demo

  Public
  Demonstration app for iSEEindex on ShinyApps.io

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 16, 2023Jun 16, 2023

• iSEEWorkshop2020

  Public
  Workshop on interactive analysis of SummarizedExperiment objects with iSEE

  TeX

  •

  Creative Commons Attribution Share Alike 4.0 International

  •55 forks•1010 stars•33 issues•11 pull request•Updated May 19, 2023May 19, 2023

• iSEE_instances

  Public
  A gallery-repository to store the commands to reproduce entire analyses for iSEE instances on public/own data

  00 forks•55 stars•00 issues•11 pull request•Updated Apr 5, 2023Apr 5, 2023

• iSEEWorkshopEuroBioc2020

  Public
  Workshop on interactive analysis of SummarizedExperiment objects with iSEE for EuroBioc2020

  workshopbioconductorisee+ 2

  workshopbioconductoriseepkgdowniseeu

  CSS

  •

  Creative Commons Attribution Share Alike 4.0 International

  •11 fork•00 stars•22 issues•11 pull request•Updated Dec 31, 2022Dec 31, 2022

• screenshots

  Public
  Generate screenshots for iSEE documentation

  Dockerfile

  •00 forks•00 stars•00 issues•11 pull request•Updated Nov 24, 2022Nov 24, 2022

• iSEEBase

  Public
  iSEEBase: Base functions and classes for iSEE

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2022Oct 10, 2022

• iSEEGenerics

  Public
  Defines S4 generic functions used in iSEE

  iseebioconductor-packageiseeu

  iseebioconductor-packageiseeu

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2022Oct 9, 2022

• iSEEwidgets

  Public
  Shiny widgets developed for iSEE

  hacktoberfest

  hacktoberfest

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2022Oct 9, 2022