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    15 repositories

    • knowledgesystems-k8s-deployment

      Public
      Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes
      CSS
      •33•13•25•4•Updated Jun 22, 2026Jun 22, 2026

    • cmo-pipelines

      Public
      Java
      •
      GNU Affero General Public License v3.0
      •11•3•57•26•Updated Jun 22, 2026Jun 22, 2026

    • useragent-block-traefik

      Public
      Plugin for Traefik to allow/disallow traffic based on user agents.
      Go
      •
      Apache License 2.0
      •6•0•0•0•Updated May 21, 2026May 21, 2026

    • Biomni

      Public
      Biomni: a general-purpose biomedical AI agent
      Python
      •
      Apache License 2.0
      •600•0•0•0•Updated May 21, 2026May 21, 2026

    • git-lfs-s3

      Public
      Go
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • reVUE

      Public
      repository for Variants with Unexpected Effects (in cancer)
      TypeScript
      •
      MIT License
      •2•1•4•0•Updated Oct 2, 2025Oct 2, 2025

    • reVUE-data

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•5•1•Updated Oct 2, 2025Oct 2, 2025

    • cancer-cell-portal-utils

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • curation-scrum

      Public
      Used for issue tracking of data curation efforts.
      0•0•45•0•Updated Jan 8, 2025Jan 8, 2025

    • signal

      Public
      Somatic Integration of Germline Alterations in cancer
      TypeScript
      •
      MIT License
      •5•2•18•7•Updated Mar 4, 2023Mar 4, 2023

    • pipelines-scrum

      Public
      Repository for tracking uncategorizable issues related to backend pipelines work
      0•0•37•0•Updated Aug 19, 2021Aug 19, 2021

    • vcf2maf

      Public
      Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
      Perl
      •
      Other
      •222•0•0•1•Updated Apr 6, 2020Apr 6, 2020

    • pipelines-dashboard

      Public
      Repository for MSK import pipelines dashboard
      0•0•0•0•Updated Jun 11, 2019Jun 11, 2019

    • mutationhotspots

      Public
      Algorithms to detect mutational hotspots
      sciencebig-datacancer-genomics
      sciencebig-datacancer-genomicsprecision-medicine
      Java
      •
      MIT License
      •4•9•0•0•Updated Aug 1, 2018Aug 1, 2018

    • oncokb-curation

      Public archive
      OncoKB curation website web module
      JavaScript
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 7, 2016Jun 7, 2016
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