ci: skip optional dependency paths in base checks

Author: oshaughnessy-junior

.travis/test-all-bin.sh

@@ -17,6 +17,10 @@ set -e
 
 # loop over all bin/ scripts
 for EXE in MonteCarloMarginalizeCode/Code/bin/*; do
+   if [[ ! -f ${EXE} ]]; then
+       echo " Not file : " ${EXE}
+       continue
+   fi
    # skip scripts with explicit bilby dependence
    if [[ ${EXE} == *'calibration_reweighting.py' ]]; then
        continue
@@ -70,6 +74,16 @@ for EXE in MonteCarloMarginalizeCode/Code/bin/*; do
          echo "Hyperpipe  " ${EXE}
          continue
    fi   
+   # skip optional JAX driver; base CI does not install the jax extras
+   if [[ ${EXE} == *"integrate_likelihood_extrinsic_jax" ]]; then
+         echo "JAX optional  " ${EXE}
+         continue
+   fi
+   # skip optional HTCondor2 driver; base CI does not install htcondor2
+   if [[ ${EXE} == *"cepp_basic_htcondor" ]]; then
+         echo "HTCondor2 optional  " ${EXE}
+         continue
+   fi
    # skip tests that require condor environment
    if [[ ${EXE} == *"check_CIP_complete_work.py" ]]; then
          continue

.travis/test-all-mod.py

@@ -57,6 +57,20 @@
     r"\ANo module named 'cupy'\Z",
     r"\ANo module named asimov\Z",
     r"\ANo module named 'asimov'\Z",
+    r"\ANo module named jax\Z",
+    r"\ANo module named 'jax'\Z",
+    r"\ANo module named optax\Z",
+    r"\ANo module named 'optax'\Z",
+    r"\ANo module named equinox\Z",
+    r"\ANo module named 'equinox'\Z",
+    r"\ANo module named tinygp\Z",
+    r"\ANo module named 'tinygp'\Z",
+    r"\ANo module named numpyro\Z",
+    r"\ANo module named 'numpyro'\Z",
+    r"\ANo module named flowMC\Z",
+    r"\ANo module named 'flowMC'\Z",
+    r"\ANo module named htcondor2\Z",
+    r"\ANo module named 'htcondor2'\Z",
 ])))
 
 

CHANGES.rst

@@ -2,6 +2,11 @@
 0.0.18.0
 ------------
 development tree is rift_O4d.
+  - (rc0) O4d base refresh, from rift_O4c to rift_O4d: Python/numpy CI modernization (py3.10-py3.13,
+    numpy 2.x checks), Asimov/RIFT smoke tests, docs deployment, pluggable workflow backends and
+    simulation-manager prototypes, distance-grid/distance-slice likelihood export, container-family and pixi/SWIG
+    canaries, hyperpipeline ASCII workflow support, parsimonious-placement preview, EFPE and standalone NR-frame
+    utilities, plot_RIFT diagnostics, and GPU/CuPy portability fixes.
   - parsimonious-placement (preview): new RIFT.misc.tracer_placement engine (SMC+MALA, birth-death,
     and SMC-MALA+BD samplers; pluggable RF / RBF / polynomial / quadratic fits) plus two
     opt-in CLI tools that mirror the existing puffball tools' I/O contract:
@@ -28,6 +33,24 @@ development tree is rift_O4d.
     sampler hyperparameters can be set declaratively in Hydra. See
     20260513-Me-ParsimoniousPlacementOptions/parsimonious_placement_plan.md for theory, prototype results,
     rollout plan, and references.
+  - (rc1 pending) In-loop calibration marginalization: move calibration draws into ILE, add loop and fused
+    GPU kernels (including distance-marginalized and phase-marginalized paths), export cal/time diagnostics,
+    account for calibration Monte-Carlo error in reported uncertainty, add adaptive/pilot calibration proposal
+    scaffolding, and include a runnable calmarg demo with OSG/container transfer fixes.
+  - (rc1 pending) Extrinsic proposal handoff and sampler robustness: save and consolidate extrinsic GMM
+    breadcrumbs across iterations, seed later ILE jobs from those proposals, add GMM proposal/adaptation
+    controls and diagnostics, improve log-domain covariance/ESS handling, and thread the cal/extrinsic seed
+    barriers through CEPP/puffball workflows.
+  - (rc1 pending) Differentiable JAX likelihood/export work: optional jax_gp interpolators, differentiable
+    export artifacts, quad-GP and RF/GP validation tooling, jax_cip experiments, and a JAX ILE driver with
+    AD-compatible extrinsic likelihood, distance/phase marginalization, network coordinates, and gradient-aware
+    samplers. These remain optional extras and are skipped by base CI when JAX is not installed.
+  - (rc1 pending) LISA support: add a LISA compatibility layer, response import path, standalone helper
+    contract, LISA ILE scaffold, and synthetic operational/import tests.
+  - (rc1 pending) EOS/coordinate and workflow updates: add NMB/PCA/tabular EOS sequence dispatch and
+    single-EOS-index evidence support, coordinate-plugin hooks for posterior plotting and puffing, Morisaki-frame
+    and aligned-spin coordinate helpers for GP/JAX studies, container-universe/OSDF scitokens support, and
+    per-machine container image selection.
 
 0.0.17.9
 ------------