Update package repositories #676
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| name: Update package repositories | |
| on: | |
| schedule: | |
| - cron: 0 3 * * * | |
| workflow_dispatch: | |
| permissions: | |
| contents: write | |
| env: | |
| PHARMAPKGS_REMOTE_REPO: https://cloud.r-project.org/ | |
| PHARMAPKGS_LOCAL_REPO: ${{ github.workspace }} | |
| PHARMAPKGS_LIMIT: ${{ vars.PHARMAPKGS_LIMIT || 100}} | |
| PHARMAPKGS_EXCLUDED_METRICS: ${{ vars.PHARMAPKGS_EXCLUDED_METRICS || 'assess_covr_coverage,assess_r_cmd_check' }} | |
| LOGGER_LOG_LEVEL: DEBUG | |
| jobs: | |
| main: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-22.04] | |
| r_version: ["4.4"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| install-quarto: false | |
| - uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Unpack existing reports | |
| working-directory: src/contrib/Meta | |
| run: | | |
| tar xzf reports.tar.gz | |
| rm reports.tar.gz | |
| - name: Build pharmapkgs | |
| env: | |
| PHARMAPKGS_PLATFORM: ${{ matrix.platform }} | |
| PHARMAPKGS_R_VERSION: ${{ matrix.r_version }} | |
| run: R CMD build . | |
| - name: Install pharmapkgs | |
| env: | |
| PHARMAPKGS_PLATFORM: ${{ matrix.platform }} | |
| PHARMAPKGS_R_VERSION: ${{ matrix.r_version }} | |
| run: R CMD INSTALL pharmapkgs_*.tar.gz | |
| - name: Update package repositories | |
| env: | |
| PHARMAPKGS_PLATFORM: ${{ matrix.platform }} | |
| PHARMAPKGS_R_VERSION: ${{ matrix.r_version }} | |
| shell: Rscript {0} | |
| run: | | |
| library("pharmapkgs") | |
| github_actions() | |
| - name: Compress reports | |
| working-directory: src/contrib/Meta | |
| run: | | |
| tar czf reports.tar.gz *.md | |
| rm *.md | |
| # - name: Setup tmate session | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 | |
| # timeout-minutes: 15 | |
| - uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_message: "Auto-update: ${{matrix.platform}}, R-${{matrix.r_version}}" | |
| file_pattern: ${{ github.workspace }}/src/contrib/Meta/*.tar.gz ${{ github.workspace }}/src/contrib/PACKAGES | |
| add_options: '-u' | |
| - name: Remove untracked files | |
| run: git clean -fdx |