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Add citations to triloop and tetraloop config files
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Lines changed: 20 additions & 5 deletions

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src/primer3_config/tetraloop.dh

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# tetraloop bonuses for GNRA and GNAB kcal/mol*(-10)
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# Enthalpy tetraloop bonuses for GNRA and GNAB
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# values are in cal / mol
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# Values in this file originate from:
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# SantaLucia, Hicks, "The Thermodynamics of DNA Structural Motifs". Supplemental Material. Annu Rev Biophys Biomol Struct. 2004:33:415-40. doi: 10.1146/annurev.biophys.32.110601.141800.
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AAAAAT 500
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AAAACT 700

src/primer3_config/tetraloop.ds

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# VIIDE
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# Entropy tetraloop bonuses for GNRA and GNAB
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# values are in cal / mol K
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# Values in this file originate from:
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# SantaLucia, Hicks, "The Thermodynamics of DNA Structural Motifs". Supplemental Material. Annu Rev Biophys Biomol Struct. 2004:33:415-40. doi: 10.1146/annurev.biophys.32.110601.141800.
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AAAAAT -650
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AAAACT 1610

src/primer3_config/triloop.dh

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# triloop bonus
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# Enthalpy Hairpin loop
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# Enthalpy Hairpin loop GNA triloop bonus
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# values are in cal / mol
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# Values in this file originate from:
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# SantaLucia, Hicks, "The Thermodynamics of DNA Structural Motifs". Supplemental Material. Annu Rev Biophys Biomol Struct. 2004:33:415-40. doi: 10.1146/annurev.biophys.32.110601.141800.
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AGAAT -1500
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AGCAT -1500

src/primer3_config/triloop.ds

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# bonuses for GNA triloops
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# Entropy Hairpin loop GNA triloop bonus
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# values are in cal / mol K
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# Values in this file originate from:
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# SantaLucia, Hicks, "The Thermodynamics of DNA Structural Motifs". Supplemental Material. Annu Rev Biophys Biomol Struct. 2004:33:415-40. doi: 10.1146/annurev.biophys.32.110601.141800.
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AGAAT 0
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AGCAT 0

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