Enable using a scale>0 in staining-based segmentation for CLI/pipeline #527
alihamraouici.yml
on: pull_request
pre-commit
10s
Matrix: test_cellpose_v4
Matrix: test_pip_install
Matrix: test_wsi
Matrix: pytest and snakemake
Annotations
17 warnings and 3 notices
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pre-commit
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, actions/checkout@v3, actions/setup-python@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (windows-latest, 3.13)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (windows-latest, 3.13)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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pytest and snakemake (ubuntu-latest, 3.11)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (ubuntu-latest, 3.11)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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pytest and snakemake (windows-latest, 3.11)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (windows-latest, 3.11)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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pytest and snakemake (ubuntu-latest, 3.13)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (ubuntu-latest, 3.13)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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pytest and snakemake (macOS-latest, 3.11)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (macOS-latest, 3.11)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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pytest and snakemake (ubuntu-latest, 3.12)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (ubuntu-latest, 3.12)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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pytest and snakemake (macOS-latest, 3.12)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (macOS-latest, 3.12)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
|
pytest and snakemake (windows-latest, 3.12)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: conda-incubator/setup-miniconda@v3. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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pytest and snakemake (windows-latest, 3.12)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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macOS-latest | pytest with pip install
The macos-latest label will migrate to macOS 26 beginning June 15, 2026. For more information see https://github.com/actions/runner-images/issues/14167
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macOS-latest | pytest wsi
The macos-latest label will migrate to macOS 26 beginning June 15, 2026. For more information see https://github.com/actions/runner-images/issues/14167
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macOS-latest | pytest cellpose v4
The macos-latest label will migrate to macOS 26 beginning June 15, 2026. For more information see https://github.com/actions/runner-images/issues/14167
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