Good first issues

[quentinblampey]

If you want to contribute, here I list some good first issues to solve. See also the CONTRIBUTING.md instructions.

Dev tasks with no spatial-omics knowledge needed

• [Low priority] [Feature] Ping PyPI before running the Docker step in the actions #341
• [Low priority] [Feature] Nightly CI runs #342

Dev tasks with some spatial-omics context required

• [Medium priority] [Feature] Nimbus model support #337
• context: article in the issue, sopa.aggregate, sopa article
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• [Medium priority] Handling Annotations from QuPath scverse/spatialdata-plot#430 (comment) and render_shapes cannot handle shapes with multiple holes scverse/spatialdata-plot#505
• context: spatialdata, spatialdata-plot, geopandas
• Note: I suggested using an internal function of Geopandas in one of my comments, but I haven't tried to see how it could be added inside spatialdata-plot. The PR has to be done in spatialdata-plot and not in sopa.

More DL, but requires also more context

• [Feature] Investigate other gene embeddings novae#29
• context: Novae article, UMAP, scGPT

@clementpiat FYI