ModuleNotFoundError: No module named 'pyranges'

[marco-mariotti]

(Pretending to not knowing what's going on)

Hi, I had some code that built upon pyranges 1.1.x, and now that I upgraded to pyranges 1.2.x, it crashes with:

ModuleNotFoundError: No module named 'pyranges'

[marco-mariotti]

Since v.1.2.0, the module name is pyranges1. So update all your import statements to look like this:

import pyranges1 as pr

from pyranges1 import PyRanges

(Leaving this issue open to be found by affected users)

[casblaauw]

Putting this here so that other affected users can find it:
This also seems to happen the other way around. I (attempted to) install pyranges1, but couldn't get it to import - while mamba said it was installed, importing in python insisted it wasn't anywhere to be found. The reason was that it installed pyranges1 0.1.1, which (perhaps confusingly) still uses the pyranges alias despite me explicitly requesting pyranges1. It presumably installed this since I'm still on an older TensorFlow version, which limits me to numpy 1.x, and 0.1.1 was I guess the last version that supported this.

EDIT: It actually installed pyranges1 0.1.1 because I'm on python 3.11, and this seems to require 3.12 or up. Conclusion still holds, though.