.gitignore

# ---------------------------------------------------------------------------
# Large external inputs — fetched by src/step00_fetch_data.py, never committed.
# (~8.6 GB total; core_gbmap.h5ad alone is ~8.1 GB.)
# The small connector/LLM caches in data/cache/ ARE committed (see README).
# ---------------------------------------------------------------------------
# Ignore the directory *contents* (not the directory itself) so the README and
# .gitkeep can be re-included — a trailing-slash `data/raw/` rule would block
# re-inclusion of files beneath it.
data/raw/*
!data/raw/.gitkeep
!data/raw/README.md

# Python
__pycache__/
*.py[cod]
*.egg-info/
.ipynb_checkpoints/
.venv/
venv/
env/

# OS / editor cruft
.DS_Store
.Rhistory
.RData
*.swp
*~
.vscode/
.idea/

# Secrets — never commit API keys
.env
*.key