bump nixpkgs

Why
===
* dotnet10 was segfaulting on the old version

What changed
===
* Moved python 3.9 to historical modules since it is out of support
* Moved python-with-prybar-3.10 to historical modules since we aren't
supporting prybar any more and it was having trouble evaluating with
the new nixpkgs
* Update lua language server based on deprecation recommendations in
nixpkgs
* Update ruby from 3.1 to 4.0

Test plan
===
```
nix build '.#"dotnet-10.0"'
```
builds now

Author: ryantm

flake.lock

@@ -221,6 +221,13 @@ let
         displayVersion = "3.8";
       };
     }
+    {
+      moduleId = "python-3.9";
+      commit = "ae6ed05c623804560afd1cf3d80d13b6170d5c24";
+      overrides = {
+        displayVersion = "3.9";
+      };
+    }
     {
       moduleId = "r-4.2";
       commit = "1e1bb663068482cdb7c04bf585daed00205c0140";
@@ -248,9 +255,22 @@ let
         displayVersion = "0";
       };
     }
+    {
+      moduleId = "python-with-prybar-3.10";
+      commit = "ae6ed05c623804560afd1cf3d80d13b6170d5c24";
+      overrides = {
+        displayVersion = "3.10";
+      };
+    }
   ];
 
-  moduleFromHistory = { moduleId, commit, deployment ? false, overrides }:
+  moduleFromHistory =
+    {
+      moduleId,
+      commit,
+      deployment ? false,
+      overrides,
+    }:
     let
       flake = getFlake "github:replit/nixmodules/${commit}";
       module =
@@ -263,30 +283,28 @@ let
       name = "replit-module-${moduleId}";
       buildCommand = ''
         set -x
-        ${pkgs.jq}/bin/jq --argjson overrides '${builtins.toJSON(overrides)}' '. * $overrides' < ${module} > $out
+        ${pkgs.jq}/bin/jq --argjson overrides '${builtins.toJSON (overrides)}' '. * $overrides' < ${module} > $out
       '';
     };
 
-  modules = foldl'
-    (acc: module:
-      acc // ({
-        ${module.moduleId} = moduleFromHistory module;
-      })
-    )
-    { }
-    historicalModulesList;
+  modules = foldl' (
+    acc: module:
+    acc
+    // ({
+      ${module.moduleId} = moduleFromHistory module;
+    })
+  ) { } historicalModulesList;
 
-  deploymentModules = foldl'
-    (acc: module:
-      acc // ({
-        ${module.moduleId} = moduleFromHistory {
-          inherit (module) moduleId commit overrides;
-          deployment = true;
-        };
-      })
-    )
-    { }
-    historicalModulesList;
+  deploymentModules = foldl' (
+    acc: module:
+    acc
+    // ({
+      ${module.moduleId} = moduleFromHistory {
+        inherit (module) moduleId commit overrides;
+        deployment = true;
+      };
+    })
+  ) { } historicalModulesList;
 
 in
 {

pkgs/historical-modules/default.nix

@@ -1,6 +1,6 @@
 { pkgs, lib, ... }:
 let
-  clang = pkgs.clang_14;
+  clang = pkgs.clang_20;
   run-extensions = [ ".c" ]; # use this list for file-param runners because
   # we don't want .h files to be runnable
   clang-compile = import ../../clang-compile {

pkgs/modules/c/default.nix

@@ -1,6 +1,6 @@
 { pkgs, lib, ... }:
 let
-  clang = pkgs.clang_14;
+  clang = pkgs.clang_20;
   clang-compile = import ../../clang-compile {
     inherit pkgs;
     inherit clang;

pkgs/modules/cpp/default.nix

@@ -1,15 +1,27 @@
-{ pkgs, pkgs-23_05, pkgs-24_11, pkgs-25_05, pkgs-master, pkgs-staging, ... }:
+{
+  pkgs,
+  pkgs-23_05,
+  pkgs-24_11,
+  pkgs-25_05,
+  pkgs-master,
+  pkgs-staging,
+  ...
+}:
 with builtins;
 let
-  mkModule = path: pkgs.callPackage ../moduleit/entrypoint.nix {
-    configPath = path;
-    inherit pkgs-23_05 pkgs-24_11;
-  };
-  mkDeploymentModule = path: pkgs.callPackage ../moduleit/entrypoint.nix {
-    configPath = path;
-    inherit pkgs-23_05 pkgs-24_11;
-    deployment = true;
-  };
+  mkModule =
+    path:
+    pkgs.callPackage ../moduleit/entrypoint.nix {
+      configPath = path;
+      inherit pkgs-23_05 pkgs-24_11;
+    };
+  mkDeploymentModule =
+    path:
+    pkgs.callPackage ../moduleit/entrypoint.nix {
+      configPath = path;
+      inherit pkgs-23_05 pkgs-24_11;
+      deployment = true;
+    };
   apply-upgrade-map = import ../upgrade-map;
   historical = pkgs.callPackage ../historical-modules { };
 
@@ -19,31 +31,29 @@ let
       pypkgs = pkgs-24_11.python39Packages;
     })
     (import ./python {
-      python = pkgs.python310Full;
+      python = pkgs.python310;
       pypkgs = pkgs.python310Packages;
     })
     (import ./python {
-      python = pkgs.python311Full;
+      python = pkgs.python311;
       pypkgs = pkgs.python311Packages;
     })
     (import ./python {
-      python = pkgs.python312Full;
+      python = pkgs.python312;
       pypkgs = pkgs.python312Packages;
     })
     (import ./python-base {
-      python = pkgs.python311Full;
+      python = pkgs.python311;
       pypkgs = pkgs.python311Packages;
     })
     (import ./python-base {
-      python = pkgs.python312Full;
+      python = pkgs.python312;
       pypkgs = pkgs.python312Packages;
     })
     (import ./python-base {
-      python = pkgs.python313Full;
+      python = pkgs.python313;
       pypkgs = pkgs.python313Packages;
     })
-    (import ./python-with-prybar)
-
     (import ./pyright-extended {
       nodejs = pkgs-24_11.nodejs-18_x;
     })
@@ -119,8 +129,8 @@ let
     (import ./R)
     (import ./replit)
     (import ./ruby {
-      ruby = pkgs.ruby_3_1;
-      rubyPackages = pkgs.rubyPackages_3_1;
+      ruby = pkgs.ruby_4_0;
+      rubyPackages = pkgs.rubyPackages_4_0;
     })
     (
       # pinning ruby to specific version to avoid breaking gems with built .so's
@@ -156,47 +166,54 @@ let
   ];
 
   activeModules = listToAttrs (
-    map
-      (moduleInput:
-        let
-          module = mkModule moduleInput;
-        in
-        {
-          name = get-module-id module;
-          value = module;
-        }
-      )
-      modulesList
+    map (
+      moduleInput:
+      let
+        module = mkModule moduleInput;
+      in
+      {
+        name = get-module-id module;
+        value = module;
+      }
+    ) modulesList
   );
 
   modules = apply-upgrade-map (activeModules // historical.modules);
 
   activeDeploymentModules = listToAttrs (
-    map
-      (moduleInput:
-        let
-          module = mkDeploymentModule moduleInput;
-        in
-        {
-          name = get-deployment-module-id module;
-          value = module;
-        }
-      )
-      modulesList
+    map (
+      moduleInput:
+      let
+        module = mkDeploymentModule moduleInput;
+      in
+      {
+        name = get-deployment-module-id module;
+        value = module;
+      }
+    ) modulesList
   );
 
   deploymentModules = apply-upgrade-map (activeDeploymentModules // historical.deploymentModules);
 
-  get-module-id = module:
+  get-module-id =
+    module:
     let
       match = builtins.match "^\/nix\/store\/([^-]+)-replit-module-(.+)$" module.outPath;
     in
     builtins.elemAt match 1;
 
-  get-deployment-module-id = module:
+  get-deployment-module-id =
+    module:
     let
       match = builtins.match "^\/nix\/store\/([^-]+)-replit-deployment-module-(.+)$" module.outPath;
     in
     builtins.elemAt match 1;
 in
-{ inherit modules activeModules deploymentModules activeDeploymentModules; }
+{
+  inherit
+    modules
+    activeModules
+    deploymentModules
+    activeDeploymentModules
+    ;
+}

pkgs/modules/default.nix

@@ -1,5 +1,6 @@
 { pkgs, lib, ... }:
-let lua-version = lib.versions.majorMinor pkgs.lua.version;
+let
+  lua-version = lib.versions.majorMinor pkgs.lua.version;
 in
 {
   id = "lua-${lua-version}";
@@ -25,6 +26,6 @@ in
     name = "lua-language-server";
     language = "lua";
 
-    start = "${pkgs.sumneko-lua-language-server}/bin/lua-language-server";
+    start = "${pkgs.lua-language-server}/bin/lua-language-server";
   };
 }