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Copy pathwork_log_mmrf
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7 lines (4 loc) · 825 Bytes
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### step 1 ###
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/mmrf/b1n --log /scratch1/fs1/dinglab/scao/gw/mmrf/b1n.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q general --step 1
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/mmrf/b1n --log /scratch1/fs1/dinglab/scao/gw/mmrf/b1n.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q general --step 2
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/mmrf/b1n --log /scratch1/fs1/dinglab/scao/gw/mmrf/b1n.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q general --step 3