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Pindel 0.2.4w April 25, 2013
-first version after moving to WashU TGI
-changed test runtime max
Pindel 0.2.4t August 13, 2012
- resolved bug in which using pindel with a single incorrect option (like ./pindel -g) caused a segmentation fault
- updated pindel2vcf to version 0.5.0; -G (GATK-compatibility option) now works properly even for unusual SVs; END positions updated according to http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41, resolved mysterious ".:10" genotypes, and added -P option to allow fusing all output files into one.
- if an event is near multiple breakdancer events, all of these events will be investigated now