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CODE_OF_CONDUCT.html

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CONTRIBUTING.html

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LICENSE.html

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articles/Using-EpiStrainDynamics.html

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articles/algorithmic-scaling.html

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articles/algorithmic-scaling.md

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@@ -290,10 +290,10 @@ knitr::kable(scaling_results, digits = 3,
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| method | pathogen_structure | scaling_exponent | r_squared |
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|:------------|:-------------------|-----------------:|----------:|
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| p_spline | multiple | 1.019 | 0.997 |
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| p_spline | single | 0.846 | 0.991 |
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| random_walk | multiple | 0.966 | 0.999 |
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| random_walk | single | 0.878 | 0.982 |
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| p_spline | multiple | 1.013 | 0.996 |
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| p_spline | single | 0.854 | 0.991 |
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| random_walk | multiple | 0.967 | 0.999 |
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| random_walk | single | 0.880 | 0.981 |
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Scaling exponents: time complexity approximately O(n^exponent)
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sessionInfo()
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#> R version 4.5.3 (2026-03-11)
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#> Platform: x86_64-pc-linux-gnu
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#> Running under: Ubuntu 24.04.3 LTS
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#> Running under: Ubuntu 24.04.4 LTS
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#>
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#> Matrix products: default
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#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
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#> [34] xts_0.14.2 future_1.70.0 inline_0.3.21
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#> [37] globals_0.19.1 scales_1.4.0 MASS_7.3-65
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#> [40] anytime_0.3.12 cli_3.6.5 rmarkdown_2.30
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#> [43] ragg_1.5.1 generics_0.1.4 otel_0.2.0
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#> [43] ragg_1.5.2 generics_0.1.4 otel_0.2.0
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#> [46] RcppParallel_5.1.11-2 future.apply_1.20.2 cachem_1.1.0
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#> [49] rstan_2.32.7 splines_4.5.3 bayesplot_1.15.0
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#> [52] parallel_4.5.3 matrixStats_1.5.0 vctrs_0.7.2
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#> [79] textshaping_1.0.5 evaluate_1.0.5 lattice_0.22-9
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#> [82] tsibble_1.2.0 bslib_0.10.0 rstantools_2.6.0
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#> [85] class_7.3-23 Rcpp_1.1.1 gridExtra_2.3
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#> [88] prodlim_2026.03.11 xfun_0.57 fs_2.0.0
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#> [88] prodlim_2026.03.11 xfun_0.57 fs_2.0.1
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#> [91] zoo_1.8-15 pkgconfig_2.0.3
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```
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articles/parameter-recovery.html

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articles/parameter-recovery.md

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@@ -731,7 +731,7 @@ correctly specified and the inference algorithms work as intended.
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sessionInfo()
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#> R version 4.5.3 (2026-03-11)
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#> Platform: x86_64-pc-linux-gnu
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#> Running under: Ubuntu 24.04.3 LTS
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#> Running under: Ubuntu 24.04.4 LTS
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#>
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#> [34] xts_0.14.2 future_1.70.0 inline_0.3.21
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#> [37] globals_0.19.1 scales_1.4.0 MASS_7.3-65
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#> [40] anytime_0.3.12 cli_3.6.5 rmarkdown_2.30
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#> [43] ragg_1.5.1 generics_0.1.4 otel_0.2.0
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#> [43] ragg_1.5.2 generics_0.1.4 otel_0.2.0
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#> [46] RcppParallel_5.1.11-2 future.apply_1.20.2 cachem_1.1.0
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#> [49] rstan_2.32.7 splines_4.5.3 bayesplot_1.15.0
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#> [52] parallel_4.5.3 matrixStats_1.5.0 vctrs_0.7.2
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#> [79] textshaping_1.0.5 evaluate_1.0.5 lattice_0.22-9
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#> [82] tsibble_1.2.0 bslib_0.10.0 rstantools_2.6.0
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#> [85] class_7.3-23 Rcpp_1.1.1 gridExtra_2.3
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#> [88] prodlim_2026.03.11 xfun_0.57 fs_2.0.0
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#> [88] prodlim_2026.03.11 xfun_0.57 fs_2.0.1
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#> [91] zoo_1.8-15 pkgconfig_2.0.3
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```

authors.html

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