Deploying to gh-pages from @ 072e3aa 🚀

Author: smwindecker

articles/Using-EpiStrainDynamics.html

@@ -290,10 +290,10 @@ knitr::kable(scaling_results, digits = 3,
 
 | method      | pathogen_structure | scaling_exponent | r_squared |
 |:------------|:-------------------|-----------------:|----------:|
-| p_spline    | multiple           |            1.008 |     0.996 |
-| p_spline    | single             |            0.838 |     0.990 |
-| random_walk | multiple           |            0.967 |     0.999 |
-| random_walk | single             |            0.889 |     0.979 |
+| p_spline    | multiple           |            1.011 |     0.996 |
+| p_spline    | single             |            0.835 |     0.988 |
+| random_walk | multiple           |            0.964 |     0.999 |
+| random_walk | single             |            0.880 |     0.981 |
 
 Scaling exponents: time complexity approximately O(n^exponent)
 

articles/algorithmic-scaling.html

@@ -5,7 +5,7 @@ articles:
   articles/algorithmic-scaling: algorithmic-scaling.html
   articles/parameter-recovery: parameter-recovery.html
   Using-EpiStrainDynamics: Using-EpiStrainDynamics.html
-last_built: 2026-03-17T21:14Z
+last_built: 2026-03-18T05:41Z
 urls:
   reference: https://acefa-hubs.github.io/EpiStrainDynamics/reference
   article: https://acefa-hubs.github.io/EpiStrainDynamics/articles

articles/algorithmic-scaling.md

@@ -139,7 +139,7 @@ fit_model(
 
   Numeric value between 0 and 1 indicating target average acceptance
   probability used in
-  [`rstan::sampling`](https://mc-stan.org/rstan/reference/stanmodel-method-sampling.html).
+  [`rstan::sampling`](https://rdrr.io/pkg/rstan/man/stanmodel-method-sampling.html).
   Default value is 0.9.
 
 - multi_cores:
@@ -169,7 +169,7 @@ fit_model(
 - ...:
 
   additional arguments to
-  [`rstan::sampling()`](https://mc-stan.org/rstan/reference/stanmodel-method-sampling.html),
+  [`rstan::sampling()`](https://rdrr.io/pkg/rstan/man/stanmodel-method-sampling.html),
   such as `init`
 
 ## Value