update urls #101
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| # NOTE: This workflow is overkill for most R packages | |
| # check-standard.yaml is likely a better choice | |
| # usethis::use_github_action("check-standard") will install it. | |
| # | |
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - ghactions | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - ghactions | |
| - main | |
| - master | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-22.04, r: 'release'} | |
| # - {os: windows-latest, r: '3.6'} | |
| # - {os: ubuntu-16.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest", http-user-agent: "R/4.0.0 (ubuntu-16.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | |
| # - {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | |
| # - {os: ubuntu-16.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | |
| # - {os: ubuntu-16.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | |
| # - {os: ubuntu-16.04, r: '3.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | |
| # - {os: ubuntu-16.04, r: '3.3', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM_ROOT: "https://packagemanager.posit.co" | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup JAVA | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: '1.8' # The JDK version to make available on the path. | |
| java-package: jdk # (jre, jdk, or jdk+fx) - defaults to jdk | |
| architecture: x64 # (x64 or x86) - defaults to x64 | |
| - name: Setup NETLOGO Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| wget http://ccl.northwestern.edu/netlogo/6.1.1/NetLogo-6.1.1-64.tgz | |
| mkdir /home/runner/work/netlogo | |
| tar -xvzf NetLogo-6.1.1-64.tgz --directory /home/runner/work/netlogo | |
| rm -rf NetLogo-6.1.1-64.tgz | |
| - name: Setup NETLOGO MacOS # we use the tgz version here as well | |
| if: runner.os == 'MacOS' | |
| run: | | |
| wget http://ccl.northwestern.edu/netlogo/6.1.1/NetLogo-6.1.1-64.tgz | |
| mkdir /Applications/netlogo | |
| tar -xvzf NetLogo-6.1.1-64.tgz --directory /Applications/netlogo | |
| rm -rf NetLogo-6.1.1-64.tgz | |
| # wget https://raw.githubusercontent.com/Homebrew/homebrew-cask/ab6bc2bebb332b01db1babc896996b8fa01cd54a/Casks/netlogo.rb | |
| # brew install --HEAD -s netlogo.rb | |
| # rm -rf netlogo.rb | |
| - name: Setup NETLOGO Windows | |
| if: runner.os == 'Windows' | |
| run: choco install netlogo --version=6.1.1 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - name: Setup PANDOC | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "16.04"))') | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Codecov test coverage | |
| run: covr::codecov(token = "3651cae6-2263-4130-a651-75eb7fc02149") | |
| shell: Rscript {0} |