refactor: rename release to simind-python-connector

Author: samdporter

CHANGELOG.md

@@ -15,4 +15,4 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Helper utilities for configuring and running SIMIND Monte Carlo simulations from Python.
 - Comprehensive test suite using `pytest`.
 - Documentation hosted on ReadTheDocs.
-- PyPI packaging (`py-smc`) with optional `dev` and `examples` dependency groups.
+- PyPI packaging (`simind-python-connector`) with optional `dev` and `examples` dependency groups.

MANIFEST.in

@@ -2,9 +2,9 @@ include README.md
 include LICENSE
 include requirements.txt
 include requirements-dev.txt
-recursive-include py_smc/data *.atn
-recursive-include py_smc/data *.json
-recursive-include py_smc/configs *.smc *.yaml
+recursive-include simind_python_connector/data *.atn
+recursive-include simind_python_connector/data *.json
+recursive-include simind_python_connector/configs *.smc *.yaml
 recursive-include docs *.rst *.py
 recursive-include tests *.py
 recursive-include examples *.py

README.md

@@ -1,9 +1,9 @@
-# py-smc
+# simind-python-connector
 
 Python SIMIND Monte Carlo Connector.
 
-[![Tests](https://github.com/samdporter/py-smc/workflows/Tests/badge.svg)](https://github.com/samdporter/py-smc/actions)
-[![Documentation Status](https://readthedocs.org/projects/py-smc/badge/?version=latest)](https://py-smc.readthedocs.io/en/latest/?badge=latest)
+[![Tests](https://github.com/samdporter/simind-python-connector/workflows/Tests/badge.svg)](https://github.com/samdporter/simind-python-connector/actions)
+[![Documentation Status](https://readthedocs.org/projects/simind-python-connector/badge/?version=latest)](https://simind-python-connector.readthedocs.io/en/latest/?badge=latest)
 [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
 [![Python Version](https://img.shields.io/badge/python-3.9%2B-blue.svg)](https://www.python.org/downloads/)
 
@@ -20,9 +20,9 @@ SIMIND is **not distributed** with this package. You must separately obtain and
 install a licensed SIMIND installation.
 
 ## Quick Links
-- [Full Documentation](https://py-smc.readthedocs.io/)
-- [Installation](https://py-smc.readthedocs.io/en/latest/installation.html)
-- [Backend Support](https://py-smc.readthedocs.io/en/latest/backends.html) - adaptor dependency matrix
+- [Full Documentation](https://simind-python-connector.readthedocs.io/)
+- [Installation](https://simind-python-connector.readthedocs.io/en/latest/installation.html)
+- [Backend Support](https://simind-python-connector.readthedocs.io/en/latest/backends.html) - adaptor dependency matrix
 
 ## What This Package Does
 1. Runs SIMIND from Python with a minimal, explicit API.
@@ -41,13 +41,13 @@ install a licensed SIMIND installation.
 ### Basic Installation
 
 ```bash
-pip install py-smc
+pip install simind-python-connector
 ```
 
 Import path remains:
 
 ```python
-import py_smc
+import simind_python_connector
 ```
 
 ### Adaptor Dependencies
@@ -128,8 +128,8 @@ when the binary exists at `./simind/simind`.
 ## Quick Start
 ```python
 import numpy as np
-from py_smc import SimindPythonConnector
-from py_smc.configs import get
+from simind_python_connector import SimindPythonConnector
+from simind_python_connector.configs import get
 
 source = np.zeros((32, 32, 32), dtype=np.float32)  # z, y, x
 source[12:20, 12:20, 12:20] = 1.0
@@ -162,7 +162,7 @@ print(total.shape)
 ### Advanced Density Conversion
 
 ```python
-from py_smc.converters.attenuation import hu_to_density_schneider
+from simind_python_connector.converters.attenuation import hu_to_density_schneider
 import numpy as np
 
 # Convert HU image to densities using Schneider2000 model
@@ -173,8 +173,8 @@ density_map = hu_to_density_schneider(hu_image)  # 44-segment clinical model
 ### Pure Python Connector (NumPy Outputs)
 
 ```python
-from py_smc import RuntimeOperator, SimindPythonConnector
-from py_smc.configs import get
+from simind_python_connector import RuntimeOperator, SimindPythonConnector
+from simind_python_connector.configs import get
 
 connector = SimindPythonConnector(
     config_source=get("AnyScan.yaml"),

docker/README.md

@@ -85,8 +85,8 @@ Notes
 - For mixed host/runtime architectures, the runner scripts auto-detect SIMIND
   binary architecture (`x86_64`/`aarch64`) and set Docker platform automatically;
   use `--docker-platform` to override.
-- `input.smc` is bundled in `py_smc/configs`; SIMIND runtime checks
+- `input.smc` is bundled in `simind_python_connector/configs`; SIMIND runtime checks
   only gate external executable availability.
-- The toy adaptor examples use `py_smc/configs/Example.yaml`,
+- The toy adaptor examples use `simind_python_connector/configs/Example.yaml`,
   a reduced projection-space profile derived from `AnyScan.yaml`.
 - These images are intended to run examples and interactive exploration.

docker/compose.yaml

@@ -3,7 +3,7 @@ services:
     build:
       context: ..
       dockerfile: docker/python/Dockerfile
-    image: py-smc/python:dev
+    image: simind-python-connector/python:dev
     working_dir: /workspace
     environment:
       SIMIND_CONNECTOR_BACKEND: python
@@ -21,7 +21,7 @@ services:
     build:
       context: ..
       dockerfile: docker/stir/Dockerfile
-    image: py-smc/stir:dev
+    image: simind-python-connector/stir:dev
     working_dir: /workspace
     environment:
       SIMIND_CONNECTOR_BACKEND: stir
@@ -39,7 +39,7 @@ services:
     build:
       context: ..
       dockerfile: docker/sirf/Dockerfile
-    image: py-smc/sirf:dev
+    image: simind-python-connector/sirf:dev
     working_dir: /workspace
     environment:
       SIMIND_CONNECTOR_BACKEND: sirf
@@ -58,7 +58,7 @@ services:
     build:
       context: ..
       dockerfile: docker/pytomography/Dockerfile
-    image: py-smc/pytomography:dev
+    image: simind-python-connector/pytomography:dev
     working_dir: /workspace
     environment:
       SIMIND_CONNECTOR_BACKEND: pytomography

docker/import_guard/sitecustomize.py

@@ -1,7 +1,7 @@
 """
 Import guard used by backend-isolated Docker environments.
 
-Set PY_SMC_BLOCK_IMPORTS to a comma-separated list of top-level module
+Set SIMIND_PYTHON_CONNECTOR_BLOCK_IMPORTS to a comma-separated list of top-level module
 names. Any import matching one of those module roots will raise ImportError.
 """
 
@@ -15,7 +15,7 @@
 
 BLOCKED_IMPORTS = {
     entry.strip()
-    for entry in os.environ.get("PY_SMC_BLOCK_IMPORTS", "").split(",")
+    for entry in os.environ.get("SIMIND_PYTHON_CONNECTOR_BLOCK_IMPORTS", "").split(",")
     if entry.strip()
 }
 

docker/python/Dockerfile

@@ -9,7 +9,7 @@ ENV SIMIND_MPI_BIN=${SIMIND_ROOT}/simind_mpi
 ENV SIMIND_SMC_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SIMIND_DATA_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SMC_DIR=${SIMIND_ROOT}/smc_dir/
-ENV PY_SMC_BLOCK_IMPORTS=sirf,stir,stirextra,pytomography
+ENV SIMIND_PYTHON_CONNECTOR_BLOCK_IMPORTS=sirf,stir,stirextra,pytomography
 ENV PYTHONPATH=/workspace/docker/import_guard:${PYTHONPATH}
 ENV PATH=${SIMIND_ROOT}/bin:${SIMIND_ROOT}:${PATH}
 

docker/pytomography/Dockerfile

@@ -10,7 +10,7 @@ ENV SIMIND_MPI_BIN=${SIMIND_ROOT}/simind_mpi
 ENV SIMIND_SMC_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SIMIND_DATA_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SMC_DIR=${SIMIND_ROOT}/smc_dir/
-ENV PY_SMC_BLOCK_IMPORTS=sirf,stir,stirextra
+ENV SIMIND_PYTHON_CONNECTOR_BLOCK_IMPORTS=sirf,stir,stirextra
 ENV PYTHONPATH=/workspace/docker/import_guard:${SIRF_INSTALL_PATH}/python
 ENV LD_LIBRARY_PATH=/opt/conda/lib:${SIRF_INSTALL_PATH}/lib:${SIRF_INSTALL_PATH}/lib64:${LD_LIBRARY_PATH}
 ENV PATH=${SIMIND_ROOT}/bin:${SIMIND_ROOT}:${SIRF_INSTALL_PATH}/bin:${PATH}

docker/sirf/Dockerfile

@@ -10,7 +10,7 @@ ENV SIMIND_MPI_BIN=${SIMIND_ROOT}/simind_mpi
 ENV SIMIND_SMC_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SIMIND_DATA_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SMC_DIR=${SIMIND_ROOT}/smc_dir/
-ENV PY_SMC_BLOCK_IMPORTS=stir,stirextra,pytomography
+ENV SIMIND_PYTHON_CONNECTOR_BLOCK_IMPORTS=stir,stirextra,pytomography
 ENV PYTHONPATH=/workspace/docker/import_guard:${SIRF_INSTALL_PATH}/python:${PYTHONPATH}
 ENV LD_LIBRARY_PATH=/opt/conda/lib:${SIRF_INSTALL_PATH}/lib:${SIRF_INSTALL_PATH}/lib64:${LD_LIBRARY_PATH}
 ENV PATH=${SIMIND_ROOT}/bin:${SIMIND_ROOT}:${SIRF_INSTALL_PATH}/bin:${PATH}

docker/stir/Dockerfile

@@ -10,7 +10,7 @@ ENV SIMIND_MPI_BIN=${SIMIND_ROOT}/simind_mpi
 ENV SIMIND_SMC_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SIMIND_DATA_DIR=${SIMIND_ROOT}/smc_dir/
 ENV SMC_DIR=${SIMIND_ROOT}/smc_dir/
-ENV PY_SMC_BLOCK_IMPORTS=sirf,pytomography
+ENV SIMIND_PYTHON_CONNECTOR_BLOCK_IMPORTS=sirf,pytomography
 ENV PYTHONPATH=/workspace/docker/import_guard:${SIRF_INSTALL_PATH}/python:${PYTHONPATH}
 ENV LD_LIBRARY_PATH=/opt/conda/lib:${SIRF_INSTALL_PATH}/lib:${SIRF_INSTALL_PATH}/lib64:${LD_LIBRARY_PATH}
 ENV PATH=${SIMIND_ROOT}/bin:${SIMIND_ROOT}:${SIRF_INSTALL_PATH}/bin:${PATH}