Summary
Add realistic test datasets to replace toy data with production-scale VCF and BAM files for comprehensive testing.
Current Limitations
- Small toy VCF files (~10-50 variants)
- No BAM file integration for IGV reports
- Missing complex inheritance patterns
- Limited annotation coverage
Proposed Datasets
- Clinical Trio - 45K variants, rich annotations, BAM files
- Research Cohort - 50 samples, 2M variants, population genetics
- Cancer Analysis - tumor-normal pairs, somatic variants
- Performance Benchmark - 1M+ variants for scalability testing
Implementation
- Cloud storage integration (S3/Azure)
- On-demand download for CI/CD
- Realistic file sizes (100MB-10GB)
- Comprehensive annotations (gnomAD, CADD, ClinVar)
Tasks
Success Criteria
- 5 realistic datasets covering major use cases
- BAM integration for IGV report testing
- Performance benchmarks with production-scale data
Labels: enhancement, testing, data, infrastructure
Summary
Add realistic test datasets to replace toy data with production-scale VCF and BAM files for comprehensive testing.
Current Limitations
Proposed Datasets
Implementation
Tasks
Success Criteria
Labels: enhancement, testing, data, infrastructure