gget/.pre-commit-config.yaml at main · scverse/gget · GitHub

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ci:
  autofix_prs: true
  autofix_commit_msg: |
    [pre-commit.ci] auto fixes from pre-commit.com hooks

    for more information, see https://pre-commit.ci
  autoupdate_branch: ""
  autoupdate_commit_msg: "[pre-commit.ci] pre-commit autoupdate"
  autoupdate_schedule: monthly
  skip: []
  submodules: false

fail_fast: false
default_language_version:
  python: python3
default_stages:
  - pre-commit
  - pre-push
minimum_pre_commit_version: 2.16.0
# Never reformat vendored binaries, bundled package data, test reference
# fixtures, or the auto-generated CI report — these are content/data whose
# exact bytes matter (CRLF in .pdb fixtures, exact-match test inputs, ...).
exclude: |
  (?x)^(
      gget/bins/
    | gget/constants/
    | tests/fixtures/
    | tests/pytest_results.*\.txt
    | \.github/badges/.*\.json
    | \.mypy-baseline\.txt
  )
repos:
  - repo: https://github.com/biomejs/pre-commit
    rev: v2.4.16
    hooks:
      - id: biome-format
  - repo: https://github.com/tox-dev/pyproject-fmt
    rev: v2.23.0
    hooks:
      - id: pyproject-fmt
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.15.15
    hooks:
      - id: ruff-check
        types_or: [python, pyi, jupyter]
        args: [--fix, --exit-non-zero-on-fix]
      - id: ruff-format
        types_or: [python, pyi, jupyter]
  # mypy is run through mypy-baseline: the ~550 pre-existing type errors are
  # grandfathered in .mypy-baseline.txt, so this hook only fails on NEW type
  # errors introduced by a change. Works on pre-commit.ci (which runs
  # --all-files) because the baseline filters by error identity, not by file.
  # To refresh the baseline after fixing errors:
  #   mypy gget | mypy-baseline sync
  # See https://github.com/scverse/gget/issues/216
  - repo: local
    hooks:
      - id: mypy-baseline
        name: mypy (new errors only, baseline-filtered)
        entry: bash -c 'mypy gget | mypy-baseline filter'
        language: python
        pass_filenames: false
        always_run: true
        # Pin everything that affects mypy's output so the baseline stays
        # reproducible across machines and pre-commit.ci (unpinned stubs drift
        # and surface "new" errors that aren't real). Bump deliberately and
        # re-sync the baseline when you do.
        additional_dependencies:
          - mypy==1.13.0
          - mypy-baseline==0.7.4
          - pandas-stubs==3.0.3.260530
          - types-requests==2.33.0.20260518
          - types-tqdm==4.68.0.20260608
          - types-beautifulsoup4==4.12.0.20250516
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v6.0.0
    hooks:
      - id: detect-private-key
      - id: check-ast
      - id: end-of-file-fixer
      - id: mixed-line-ending
        args: [--fix=lf]
      - id: trailing-whitespace
        # Preserve Markdown hard line breaks (trailing double-space) in docs.
        args: [--markdown-linebreak-ext=md]
      - id: check-case-conflict
      # Check that there are no merge conflicts (could be generated by template sync)
      - id: check-merge-conflict
        args: [--assume-in-merge]