spatialdata-integration-testing/pyproject.toml at main · scverse/spatialdata-integration-testing · GitHub

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[project]
authors = [{name = "Luca Marconato", email = "luca.marconato@scverse.org"}]
name = "spatialdata-data-converter"
requires-python = ">= 3.11"
version = "0.1.0"
#dependencies = [
#    "spatialdata @ git+https://github.com/scverse/spatialdata.git@main",
#    "spatialdata-io @ git+https://github.com/scverse/spatialdata-io.git@main",
#    "spatialdata-plot @ git+https://github.com/scverse/spatialdata-plot.git@main",
#    "spatialdata-notebooks @ git+https://github.com/scverse/spatialdata-notebooks.git@main",
##    "spatialdata-notebooks @ git+https://github.com/srivarra/spatialdata-notebooks@table-queries",
#    "napari-spatialdata @ git+https://github.com/scverse/napari-spatialdata.git@main",
#    "squidpy @ git+https://github.com/scverse/squidpy.git@main",
#]

#[build-system]
#build-backend = "hatchling.build"
#requires = ["hatchling"]
#
#[tool.hatch.metadata]
#allow-direct-references = true

[tool.pixi.workspace]
channels = ["conda-forge"]
platforms = ["osx-arm64", "linux-64"]

[tool.pixi.pypi-dependencies]
spatialdata_data_converter = { path = ".", editable = true }

[tool.pixi.dependencies]
nbconvert = ">=7.16.6,<8"
pytest = ">=8.4.1,<9"
jupyterlab = ">=4.4.5,<5"
chardet = ">=5.2.0,<6"
unzip = ">=6.0,<7"
jupyter-black = ">=0.4.0,<0.5"
pyproj = ">=3.7.1,<4"
click = ">=8.2.2,<9"
apache-airflow = ">=3.1.5,<4"
zarr = ">=3.1.5,<4"

[tool.pixi.tasks]
scheduler = "airflow standalone"
dashboard = "open http://localhost:8080"

# CLI tasks
install-env = "python -m spatialdata_data_converter install-env"
update-repos = "python -m spatialdata_data_converter update-repos"
download = "python -m spatialdata_data_converter download"
create-symlinks = "python -m spatialdata_data_converter create-symlinks"
to-zarr = "python -m spatialdata_data_converter to-zarr"
run-docs-notebook = "python -m spatialdata_data_converter run-docs-notebook"
run-reproducibility-notebook = "python -m spatialdata_data_converter run-reproducibility-notebook"
run-tests = "python -m spatialdata_data_converter run-tests"
update-dev-datasets = "python -m spatialdata_data_converter update-dev-datasets"
download-spatialdata-io-dev-datasets = "python -m spatialdata_data_converter download-spatialdata-io-dev-datasets"
upload = "python -m spatialdata_data_converter upload"
clean-airflow = "python -m spatialdata_data_converter clean-airflow"