fix packaging

now just run make to make the tar.gz

Author: slowkow

MANIFEST.in

@@ -1,2 +1,7 @@
 include README.md
-
+prune data*
+prune tests*
+exclude publish_to_pypi.md
+exclude README.md
+exclude MANIFEST.in
+exclude Makefile

Makefile

@@ -1,11 +1,11 @@
 .PHONY: clean all setup
 
-all: setup clean
+all: clean
 	python3 setup.py sdist bdist_wheel
 
 setup: requirements.txt
 	pip install -r requirements.txt
 
 clean:
-	rm -rf __pycache__ build .egg-info
+	rm -rf __pycache__ build *.egg-info .pytest_cache
 

setup.py

@@ -12,7 +12,6 @@
     long_description              = long_description,
     long_description_content_type = "text/markdown",
     url                           = "https://github.com/slowkow/harmonypy",
-    packages                      = setuptools.find_packages(),
     classifiers=[
         "Development Status :: 3 - Alpha",
         "Intended Audience :: Science/Research",
@@ -24,6 +23,6 @@
     ],
     python_requires='>=3.6',
     install_requires=['pandas','numpy','scipy', 'scikit-learn'],
+    packages=setuptools.find_packages(),
     include_package_data=True,
-    exclude_package_data={"": ["data"]},
 )