feat: download PRIDE Archive files over HTTPS + manifest helpers (stacked on #1088) #3177
trishortsdotnet.yml
on: pull_request
build
8m 57s
external-service-tests
3m 6s
integration
3m 34s
Annotations
3 errors and 53 warnings
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integration
Process completed with exit code 1.
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integration
'Tolerance' is an ambiguous reference between 'ThermoFisher.CommonCore.Data.Business.Tolerance' and 'MzLibUtil.Tolerance'
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integration
'Tolerance' is an ambiguous reference between 'ThermoFisher.CommonCore.Data.Business.Tolerance' and 'MzLibUtil.Tolerance'
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external-service-tests
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v2, actions/setup-dotnet@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L232
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L181
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L164
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L149
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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external-service-tests:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v2, actions/setup-dotnet@v1. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration
The type name 'obo' only contains lower-cased ascii characters. Such names may become reserved for the language.
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integration:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L181
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L164
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L149
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MassSpectrometry/Deconvolution/Parameters/ExampleNewDeconvolutionParametersTemplate.cs#L17
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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integration:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v2, actions/setup-dotnet@v1, codecov/codecov-action@v4. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L232
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L181
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L164
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L149
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L232
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L181
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L164
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
|
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L149
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
|
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
|
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L138
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
|
|
build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
|
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build:
mzLib/MassSpectrometry/ExperimentalDesign/IsobaricQuantSampleInfo.cs#L125
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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build:
mzLib/MzLibUtil/ClassExtensions.cs#L289
The annotation for nullable reference types should only be used in code within a '#nullable' annotations context.
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