adding easyconfigs: pydicom-3.0.1-GCCcore-13.3.0.eb, Nilearn-0.12.1-gfbf-2024a.eb, NiBabel-5.3.2-gfbf-2024a.eb

Author: Samuel Moors

easybuild/easyconfigs/n/NiBabel/NiBabel-5.3.2-gfbf-2024a.eb

@@ -0,0 +1,44 @@
+easyblock = 'PythonBundle'
+
+name = 'NiBabel'
+version = '5.3.2'
+
+homepage = 'https://nipy.github.io/nibabel'
+description = """NiBabel provides read/write access to some common medical and neuroimaging file formats,
+ including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT
+ as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and
+ annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI."""
+
+toolchain = {'name': 'gfbf', 'version': '2024a'}
+
+builddependencies = [
+    ('hatchling', '1.24.2'),
+]
+
+dependencies = [
+    ('Python', '3.12.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('Pillow', '10.4.0'),
+    ('pydicom', '3.0.1'),
+]
+
+exts_list = [
+    ('bz2file', '0.98', {
+        'checksums': ['64c1f811e31556ba9931953c8ec7b397488726c63e09a4c67004f43bdd28da88'],
+    }),
+    ('nibabel', version, {
+        'checksums': ['0bdca6503b1c784b446c745a4542367de7756cfba0d72143b91f9ffb78be569b'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/nib-dicomfs', 'bin/nib-diff', 'bin/nib-ls', 'bin/nib-nifti-dx', 'bin/parrec2nii'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = [
+    "nib-diff --help",
+    "parrec2nii --help",
+]
+
+moduleclass = 'vis'

easybuild/easyconfigs/n/Nilearn/Nilearn-0.12.1-gfbf-2024a.eb

@@ -0,0 +1,30 @@
+easyblock = 'PythonBundle'
+
+name = 'Nilearn'
+version = '0.12.1'
+
+homepage = 'https://nilearn.github.io/'
+description = """Nilearn is a Python module for fast and easy statistical learning on NeuroImaging data."""
+
+toolchain = {'name': 'gfbf', 'version': '2024a'}
+
+builddependencies = [
+    ('hatchling', '1.24.2'),
+]
+
+dependencies = [
+    ('Python', '3.12.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('lxml', '5.3.0'),
+    ('NiBabel', '5.3.2'),
+    ('scikit-learn', '1.5.2'),
+]
+
+exts_list = [
+    ('nilearn', version, {
+        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
+        'checksums': ['2112e1cdf9f7b96e0af87d679997e834ee36534fc0a970811a703700820edc4c'],
+    }),
+]
+
+moduleclass = 'vis'

easybuild/easyconfigs/p/pydicom/pydicom-3.0.1-GCCcore-13.3.0.eb

@@ -0,0 +1,22 @@
+easyblock = 'PythonPackage'
+
+name = 'pydicom'
+version = '3.0.1'
+
+homepage = 'https://pydicom.github.io/'
+description = "Pure python package for DICOM medical file reading and writing."
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+checksums = ['848ae8e36f34750cf837e48ca5cdf6f7a472145724946d5f28f529279fe11f4e']
+
+builddependencies = [
+    ('binutils', '2.42'),
+]
+dependencies = [
+    ('Python', '3.12.3'),
+]
+
+moduleclass = 'vis'