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Fix liftover outfile default to None to prevent stdout fallback
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src/jcvi/compara/synteny.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1930,7 +1930,7 @@ def liftover(args):
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"""
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p = OptionParser(liftover.__doc__)
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p.set_stripnames()
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p.set_outfile()
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p.set_outfile(outfile=None)
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blast_file, anchor_file, dist, opts = add_arguments(p, args)
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qbed, sbed, qorder, sorder, is_self = check_beds(blast_file, p, opts)

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