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tanghaibaogithub-actions[bot]
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Style fixes by Black
1 parent 99d99f8 commit 97c9f7c

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src/jcvi/formats/blast.py

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@@ -8,7 +8,15 @@
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import os.path as op
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import sys
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from ..apps.base import ActionDispatcher, OptionParser, get_abs_path, logger, need_update, popen, sh
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from ..apps.base import (
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ActionDispatcher,
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OptionParser,
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get_abs_path,
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logger,
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need_update,
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popen,
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sh,
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)
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from ..assembly.base import calculate_A50
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from ..compara.base import AnchorFile
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from ..utils.cbook import percentage

src/jcvi/formats/maf.py

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@@ -26,6 +26,7 @@ def blastz_score_to_ncbi_expectation(bz_score):
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log_prob = -bits * 0.693147181
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return 3.0e9 * exp(log_prob)
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FLANK = 60
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