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AdamtarantoCopilot
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Potential fix for pull request finding
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
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Lines changed: 3 additions & 4 deletions

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src/jcvi/compara/synteny.py

Lines changed: 3 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1928,10 +1928,9 @@ def liftover(args):
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geneA geneB
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geneC geneD
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"""
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p = OptionParser(liftover.__doc__)
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p.set_stripnames()
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p.set_outfile()
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p = OptionParser(liftover.__doc__)
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p.set_stripnames()
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p.set_outfile(outfile=None)
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blast_file, anchor_file, dist, opts = add_arguments(p, args)
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qbed, sbed, qorder, sorder, is_self = check_beds(blast_file, p, opts)
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