How to select an alternative gene name/gene ID? #446
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MatthewHaas
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The
.cdsfile that I am working with is not compatible with the.bedfile. I think the issue is incompatible gene names ("Zla###" in the.bedfile and "GWHBFHI###" in the.cdsfile.). The "Zla" identifier can be found further along in the header of the.cdsfile (under "OriGeneID="). Is there a way that I can tell the program to just grab this ID at the conversion from.cds.fasta.gzto.cds? Thanks!Edit: I was able to achieve my aims with sed, but leaving the question just in case it helps someone else.
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