MANIFEST

.travis.yml
bin/prokka
bin/prokka-abricate_to_fasta_db
bin/prokka-biocyc_to_fasta_db
bin/prokka-build_kingdom_dbs
bin/prokka-cdd_to_hmm
bin/prokka-clusters_to_hmm
bin/prokka-genbank_to_fasta_db
bin/prokka-genpept_to_fasta_db
bin/prokka-hamap_to_hmm
bin/prokka-make_tarball
bin/prokka-tigrfams_to_hmm
bin/prokka-uniprot_to_fasta_db
binaries/common/minced
binaries/common/minced.jar
binaries/common/parallel
binaries/darwin/aragorn
binaries/darwin/blastp
binaries/darwin/cmpress
binaries/darwin/cmscan
binaries/darwin/hmmpress
binaries/darwin/hmmscan
binaries/darwin/makeblastdb
binaries/darwin/prodigal
binaries/darwin/tbl2asn
binaries/linux/aragorn
binaries/linux/blastp
binaries/linux/cmpress
binaries/linux/cmscan
binaries/linux/hmmpress
binaries/linux/hmmscan
binaries/linux/makeblastdb
binaries/linux/prodigal
binaries/linux/tbl2asn
db/cm/Bacteria
db/cm/README
db/cm/Viruses
db/genus/Enterococcus
db/genus/Escherichia
db/genus/Staphylococcus
db/hmm/HAMAP.hmm
db/kingdom/Archaea/sprot
db/kingdom/Bacteria/AMR
db/kingdom/Bacteria/IS
db/kingdom/Bacteria/sprot
db/kingdom/Mitochondria/sprot
db/kingdom/Viruses/sprot
doc/ChangeLog.txt
doc/LICENSE.HAMAP
doc/LICENSE.Pfam
doc/LICENSE.Prokka
doc/LICENSE.Rfam
doc/LICENSE.UniProt
doc/prokka-manual.txt
doc/ToDoList.txt
doc/update_manual.sh
Makefile.PL
MANIFEST			This list of files
README.md
t/05_plasmid.t
test/plasmid.fna