Updated tpv with bwa-mem2 rule

Author: ccoulombe

ansible/files/galaxy/config/tpv_rules_local.yml

@@ -71,10 +71,29 @@ tools:
   toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/.*:
     cores: min(max(int(input_size * 4), 1), 16)
     mem: min(max(int(input_size * 7), 5.6), 120)
-
   toolshed.g2.bx.psu.edu/repos/bgruening/sylph_profile/sylph_profile/.*:
     cores: 4
     mem: 16
+  toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/.*:
+    cores: 32
+    mem: 240
+    rules:
+      - id: bwa_mem2_small_input_rule
+        if: input_size < 0.1
+        cores: 2
+        mem: 5.6
+      - id: bwa_mem2_medium_input_rule
+        if: 0.1 <= input_size < 1
+        cores: 4
+        mem: 14
+      - id: bwa_mem2_large_input_rule
+        if: 1 <= input_size < 20
+        cores: 8
+        mem: 28
+      - id: bwa_mem2_pretty_large_input_rule
+        if: 20 <= input_size < 100
+        cores: 16
+        mem: 120
 
 roles:
   training.*: