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Merge branch 'main' into posts/json_bot/galaxy_news/2026-04-13-huggingface-data-table-update-20260427172652
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‎posts/2026/2026-05-12-brc-gta.md‎

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mastodon-brc:
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- UseGalaxy
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linkedin-brc:
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mentions:
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linkedin-brc:
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- galaxy-project
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---
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![BRC Analytics logo](https://galaxyproject.org/images/logos/brc.png)
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Are you using BRC-Analytics.org and want to learn more about how Galaxy works? Join us next week for the Galaxy Training Academy, a free global, online, 24 hour a day training event! Info and registration [here](https://gxy.io/GTA2026-info).

‎posts/2026/2026-06-09-llm-agents-rnaseq.md‎

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- Bioinformatics
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- RNAseq
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- AI
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- LLM
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- Bioinformatics
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linkedin-galaxyproject:
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- UseGalaxy
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- RNAseq
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- AI
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- LLM
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- Bioinformatics
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mastodon-brc:
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- RNAseq
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- AI
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- LLM
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- RNAseq
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images:
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- url: https://galaxyproject.org/images/news/2026-06-09-llm-agents-reanalyze-rnaseq/scf1-across-attempts.png
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alt_text: "SCF1 expression across eight LLM agent attempts to reproduce a Candida auris RNA-seq analysis in Galaxy."
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- url: https://raw.githubusercontent.com/nekrut/galaxy-social/6876fd622c58a369f06b48500472e05298c7e984/posts/images/2026-06-09-llm-cost-spread.png
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alt_text: "Panel B: lollipop chart of LLM API cost per completing run, spanning ~47x from DeepSeek ($2.82) to Opus ($131.83), while all reach the same answer."
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---
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Eight frontier LLMs, one RNA-seq dataset. We had them reproduce a published *Candida auris* analysis by using Orbit to drive Galaxy.
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Six models independently replicated the original *SCF1* downregulation finding—while their API costs varied 47× ($2.82–$131.83).
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Read what we learned: https://galaxyproject.org/news/2026-06-09-llm-agents-reanalyze-rnaseq/

‎posts/2026/retry-697_2026-06-09-llm-agents-rnaseq.md‎

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images:
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- url: https://galaxyproject.org/images/news/2026-06-09-llm-agents-reanalyze-rnaseq/scf1-across-attempts.png
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alt_text: SCF1 expression across eight LLM agent attempts to reproduce a Candida
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auris RNA-seq analysis in Galaxy.
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- url: https://raw.githubusercontent.com/nekrut/galaxy-social/6876fd622c58a369f06b48500472e05298c7e984/posts/images/2026-06-09-llm-cost-spread.png
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alt_text: 'Panel B: lollipop chart of LLM API cost per completing run, spanning
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~47x from DeepSeek ($2.82) to Opus ($131.83), while all reach the same answer.'
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---
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Eight frontier LLMs, one RNA-seq dataset. We had them reproduce a published *Candida auris* analysis by using Orbit to drive Galaxy.
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Six models independently replicated the original *SCF1* downregulation finding—while their API costs varied 47× ($2.82–$131.83).
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Read what we learned: https://galaxyproject.org/news/2026-06-09-llm-agents-reanalyze-rnaseq/

‎posts/2026/retry-698_retry-697_2026-06-09-llm-agents-rnaseq.md‎

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images:
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- url: https://galaxyproject.org/images/news/2026-06-09-llm-agents-reanalyze-rnaseq/scf1-across-attempts.png
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alt_text: SCF1 expression across eight LLM agent attempts to reproduce a Candida
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auris RNA-seq analysis in Galaxy.
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- url: https://raw.githubusercontent.com/nekrut/galaxy-social/6876fd622c58a369f06b48500472e05298c7e984/posts/images/2026-06-09-llm-cost-spread.png
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alt_text: 'Panel B: lollipop chart of LLM API cost per completing run, spanning
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~47x from DeepSeek ($2.82) to Opus ($131.83), while all reach the same answer.'
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---
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Eight frontier LLMs, one RNA-seq dataset. We had them reproduce a published *Candida auris* analysis by using Orbit to drive Galaxy.
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Six models independently replicated the original *SCF1* downregulation finding—while their API costs varied 47× ($2.82–$131.83).
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Read what we learned: https://galaxyproject.org/news/2026-06-09-llm-agents-reanalyze-rnaseq/

‎posts/2026/retry-699_retry-698_retry-697_2026-06-09-llm-agents-rnaseq.md‎

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- UseGalaxy
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- RNAseq
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- AI
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- LLM
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- Bioinformatics
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images:
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- url: https://galaxyproject.org/images/news/2026-06-09-llm-agents-reanalyze-rnaseq/scf1-across-attempts.png
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alt_text: SCF1 expression across eight LLM agent attempts to reproduce a Candida
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auris RNA-seq analysis in Galaxy.
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- url: https://raw.githubusercontent.com/nekrut/galaxy-social/6876fd622c58a369f06b48500472e05298c7e984/posts/images/2026-06-09-llm-cost-spread.png
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alt_text: 'Panel B: lollipop chart of LLM API cost per completing run, spanning
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~47x from DeepSeek ($2.82) to Opus ($131.83), while all reach the same answer.'
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---
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Eight frontier LLMs, one RNA-seq dataset. We had them reproduce a published *Candida auris* analysis by using Orbit to drive Galaxy.
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Six models independently replicated the original *SCF1* downregulation finding—while their API costs varied 47× ($2.82–$131.83).
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Read what we learned: https://galaxyproject.org/news/2026-06-09-llm-agents-reanalyze-rnaseq/

‎posts/images/2026-06-09-llm-cost-spread.png‎

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‎posts/json_bot/galaxy_events/2026-05-08-dhxpresso-eu.md‎

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- GalaxyProject
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- EOSC
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- EuroScienceGateway
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- UniFreiburg
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📣 Enter the Galaxy: How to leverage the open source platform Galaxy for the Digital Humanities and Social Sciences
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None
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📍 Online
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📅 8 May 2026
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🔗 More info & registration: https://galaxyproject.org/events/2026-05-08-dhxpresso/

‎posts/json_bot/galaxy_events/2026-05-08-dhxpresso-global_group1.md‎

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📣 Enter the Galaxy: How to leverage the open source platform Galaxy for the Digital Humanities and Social Sciences
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None
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📍 Online
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📅 8 May 2026
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🔗 More info & registration: https://galaxyproject.org/events/2026-05-08-dhxpresso/

‎posts/json_bot/galaxy_events/2026-05-08-dhxpresso-global_group2.md‎

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📣 Enter the Galaxy: How to leverage the open source platform Galaxy for the Digital Humanities and Social Sciences
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None
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📍 Online
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📅 8 May 2026
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🔗 More info & registration: https://galaxyproject.org/events/2026-05-08-dhxpresso/

‎posts/json_bot/galaxy_events/2026-05-08-dhxpresso-us.md‎

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mastodon-galaxyproject:
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- UseGalaxy
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- GalaxyProject
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- EOSC
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- EuroScienceGateway
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---
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📣 Enter the Galaxy: How to leverage the open source platform Galaxy for the Digital Humanities and Social Sciences
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None
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📍 Online
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📅 8 May 2026
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🔗 More info & registration: https://galaxyproject.org/events/2026-05-08-dhxpresso/

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