Autoupdate tool blog post

Author: UseGalaxy.EU Jenkins Bot

_posts/2026-07-05-tool-update.md

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+---
+site: freiburg
+tags: [tools]
+title: UseGalaxy.eu Tool Updates for 2026-07-05
+supporters:
+- denbi
+- elixir
+---
+
+On 2026-07-05, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #597](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#597/)
+
+
+## Population Genomics
+
+- effective_population_size_ld_method was updated to [44df6bc11647](https://toolshed.g2.bx.psu.edu/view/ecology/effective_population_size_ld_method/44df6bc11647)
+- genetic_format_conversion was updated to [5969c92b20e4](https://toolshed.g2.bx.psu.edu/view/ecology/genetic_format_conversion/5969c92b20e4)
+- population_genomics_split_vcf_by_pop was updated to [82d7b529bd9e](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_split_vcf_by_pop/82d7b529bd9e)
+- population_genomics_vcf_filtering was updated to [53f9cb509272](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_vcf_filtering/53f9cb509272)
+- population_genomics_vcf_keep_remove_individuals was updated to [c5227eed2880](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_vcf_keep_remove_individuals/c5227eed2880)
+- population_genomics_vcf_subset was updated to [0b9504c6e514](https://toolshed.g2.bx.psu.edu/view/ecology/population_genomics_vcf_subset/0b9504c6e514)
+
+## QIIME 2
+
+- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2)
+- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623)
+
+## RNA Analysis
+
+- deseq2 was updated to [b060944b3989](https://toolshed.g2.bx.psu.edu/view/iuc/deseq2/b060944b3989)
+- eastr was updated to [d2a78ce2b1f1](https://toolshed.g2.bx.psu.edu/view/iuc/eastr/d2a78ce2b1f1)
+- tsenat was updated to [2ead6d1194e6](https://toolshed.g2.bx.psu.edu/view/iuc/tsenat/2ead6d1194e6)
+
+## Convert Formats
+
+- msconvert was updated to [252d185267fc](https://toolshed.g2.bx.psu.edu/view/galaxyp/msconvert/252d185267fc)
+- geopandas_table2geojson was updated to [4f831247b7ae](https://toolshed.g2.bx.psu.edu/view/iuc/geopandas_table2geojson/4f831247b7ae)
+
+## Assembly
+
+- instagraal was updated to [5c11b91a76dc](https://toolshed.g2.bx.psu.edu/view/bgruening/instagraal/5c11b91a76dc)
+
+## Graph/Display Data
+
+- heatmap was updated to [fe4ccc06e90e](https://toolshed.g2.bx.psu.edu/view/iuc/heatmap/fe4ccc06e90e)
+
+## Metagenomic Analysis
+
+- mags_visualization_comp_conta was updated to [50ac19944038](https://toolshed.g2.bx.psu.edu/view/iuc/mags_visualization_comp_conta/50ac19944038)
+- mags_visualization_drep_cluster_annot was updated to [042531998360](https://toolshed.g2.bx.psu.edu/view/iuc/mags_visualization_drep_cluster_annot/042531998360)
+- mags_visualization_drep_cluster_func was updated to [a70de587c7da](https://toolshed.g2.bx.psu.edu/view/iuc/mags_visualization_drep_cluster_func/a70de587c7da)
+- mags_visualization_pathway_module_heatmap was updated to [f729d5b6843a](https://toolshed.g2.bx.psu.edu/view/iuc/mags_visualization_pathway_module_heatmap/f729d5b6843a)
+- mags_visualization_sample_heatmap was updated to [f9cd29b68158](https://toolshed.g2.bx.psu.edu/view/iuc/mags_visualization_sample_heatmap/f9cd29b68158)
+- mags_visualization_taxa_sankey was updated to [2e995d7dba20](https://toolshed.g2.bx.psu.edu/view/iuc/mags_visualization_taxa_sankey/2e995d7dba20)
+
+## SAM/BAM
+
+- samtools_faidx was updated to [78d6d62d4ce4](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_faidx/78d6d62d4ce4)
+
+## Single-cell
+
+- sopa_aggregate was updated to [57d6f5624178](https://toolshed.g2.bx.psu.edu/view/iuc/sopa_aggregate/57d6f5624178)
+- sopa_patchify was updated to [4aff1aa800d6](https://toolshed.g2.bx.psu.edu/view/iuc/sopa_patchify/4aff1aa800d6)
+- sopa_report was updated to [5d9c0d2ab65f](https://toolshed.g2.bx.psu.edu/view/iuc/sopa_report/5d9c0d2ab65f)
+- sopa_resolve was updated to [dce7456373c1](https://toolshed.g2.bx.psu.edu/view/iuc/sopa_resolve/dce7456373c1)
+- sopa_segmentation was updated to [b640b0abe4c6](https://toolshed.g2.bx.psu.edu/view/iuc/sopa_segmentation/b640b0abe4c6)
+
+## Statistics
+
+- clustering_from_distmat was updated to [10abfe22d9c6](https://toolshed.g2.bx.psu.edu/view/iuc/clustering_from_distmat/10abfe22d9c6)
+- general_matrix_tool was updated to [b33018c9262e](https://toolshed.g2.bx.psu.edu/view/iuc/general_matrix_tool/b33018c9262e)
+
+## Variant Calling
+
+- ssiamb was updated to [5a4d65354257](https://toolshed.g2.bx.psu.edu/view/iuc/ssiamb/5a4d65354257)
+
+## None
+
+- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78)
+
+## Machine Learning
+
+- image_learner was updated to [7d84cdd45c15](https://toolshed.g2.bx.psu.edu/view/goeckslab/image_learner/7d84cdd45c15)
+