scriptengine-tasks-ecearth/.github/workflows/pytest.yml at master · uwefladrich/scriptengine-tasks-ecearth · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
name: Pytest and coverage
on:
  push:

env:
  TEST_DATA_REF: https://github.com/valentinaschueller/ece-4-monitoring-test-data/archive/refs/heads/main.zip
  TEST_DATA_DOWNLOAD: test-data

jobs:

  lint:

    runs-on: ubuntu-latest

    steps:
      -
        name: Checkout
        uses: actions/checkout@v4
      -
        name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.12"
      -
        name: Install flake8
        run: |
          python -m pip install flake8
      -
        name: Lint with flake8
        run: |
          # Syntax errors or undefined names
          flake8 --count --select=E9,F63,F7,F82 --show-source --statistics monitoring/
          flake8 --count --select=E9,F63,F7,F82 --show-source --statistics helpers/
          flake8 --count --select=E9,F63,F7,F82 --show-source --statistics tests/
          # All other stuff
          flake8 --exit-zero --count --statistics --exclude=__init__.py --max-line-length=88 monitoring/
          flake8 --exit-zero --count --statistics --exclude=__init__.py --max-line-length=88 helpers/
          flake8 --exit-zero --count --statistics --exclude=__init__.py --max-line-length=88 tests/

  pytest:

    runs-on: ubuntu-latest

    defaults:
      run:
        shell: bash -el {0}
    strategy:
      matrix:
        python-version: [ "3.11", "3.12", "3.13" ]

    steps:
      -
        name: Checkout
        uses: actions/checkout@v4
      -
        name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{matrix.python-version}}
      -
        name: Install miniconda
        uses: conda-incubator/setup-miniconda@v3
        with:
          miniconda-version: latest
          environment-file: conda_environment.yml
          python-version: ${{matrix.python-version}}
      -
        name: Install pytest
        run: |
          python -m pip install pytest
      -
        name: Install se-t-ece from source
        run: |
          python -m pip install .
      -
        name: Print environment info
        run: |
          conda info
          conda list
      -
        name: Download test data
        run: |
          mkdir ${TEST_DATA_DOWNLOAD};
          wget -O ${TEST_DATA_DOWNLOAD}/test-data.zip ${TEST_DATA_REF};
          unzip -q ${TEST_DATA_DOWNLOAD}/test-data.zip -d ${TEST_DATA_DOWNLOAD};
          mv ${TEST_DATA_DOWNLOAD}/ece-4-monitoring-test-data-main/ tests/testdata;
      -
        name: Run pytest
        run: |
          pytest

  coverage:

    needs: pytest
    runs-on: ubuntu-latest

    defaults:
      run:
        shell: bash -el {0}

    steps:
      -
        name: Checkout
        uses: actions/checkout@v4
      -
        name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.12"
      -
        name: Install miniconda
        uses: conda-incubator/setup-miniconda@v3
        with:
          miniconda-version: latest
          environment-file: conda_environment.yml
          python-version: "3.12"
      -
        name: Install se-t-ece from source
        run: |
          python -m pip install .
      -
        name: Install pytest, coverage, coveralls
        run: |
          python -m pip install pytest
          python -m pip install coverage
          python -m pip install coveralls
      -
        name: Download test data
        run: |
          mkdir ${TEST_DATA_DOWNLOAD};
          wget -O ${TEST_DATA_DOWNLOAD}/test-data.zip ${TEST_DATA_REF};
          unzip -q ${TEST_DATA_DOWNLOAD}/test-data.zip -d ${TEST_DATA_DOWNLOAD};
          mv ${TEST_DATA_DOWNLOAD}/ece-4-monitoring-test-data-main/ tests/testdata;
      -
        name: Run pytest+coverage
        run: |
          coverage run -m pytest
          coverage lcov
      -
        name: Publish on coveralls.io
        uses: coverallsapp/github-action@master
        with:
          github-token: ${{ secrets.GITHUB_TOKEN }}
          path-to-lcov: coverage.lcov