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Configure flake8 and isort properly for use with black #98

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@valentinaschueller

Since we use isort and flake8 in addition to black for code formatting/linting, it makes sense to configure them s.th. they do not contradict the black settings. This is described here. By doing this, the order of calling isort/black should not matter anymore. Also, we can then simplify the flake8 calls in our Github Workflows.

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