Is your feature request related to a problem? Please describe.
When I run seq2science with Salmon as the quantifier for differential gene expression analysis, I got the result where the gene names such as FGF2 with its counts among all samples. Unfortunately, many genomes have a lot of genes only have gene id (ENSGALG00000011835) with no gene name. These entries will be discarded by current default setting of salmon with seq2science.
Describe the solution you'd like
Can we use gene_id so that we will not miss any count data?
(optional) Additional context
Another possible way to do it is use "ENSGALG00000011835|FGF2" for entry with both gene Id and name, and "ENSGALG00000011835" for entry only have gene id.
Your help will be highly appreciated
Is your feature request related to a problem? Please describe.
When I run seq2science with Salmon as the quantifier for differential gene expression analysis, I got the result where the gene names such as FGF2 with its counts among all samples. Unfortunately, many genomes have a lot of genes only have gene id (ENSGALG00000011835) with no gene name. These entries will be discarded by current default setting of salmon with seq2science.
Describe the solution you'd like
Can we use gene_id so that we will not miss any count data?
(optional) Additional context
Another possible way to do it is use "ENSGALG00000011835|FGF2" for entry with both gene Id and name, and "ENSGALG00000011835" for entry only have gene id.
Your help will be highly appreciated