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🔬 Science & Research

Servers accessing scientific databases, research platforms, or providing tools for scientific computation/simulation.

  • morluto/jacobian: MCP server, CLI, and Python library for composable mathematics: exact computation and conjecture testing across polynomial maps, linear algebra, and graph algorithms. Install: npx -y jacobian mcp.

  • xmpuspus/ph-civic-data-mcp: Philippine civic data plus global Earth observation as MCP tools. Browse, describe and query the full PSA OpenSTAT statistical catalog (~2,900 tables) through three tools with bounded, validated queries. Also covers PSGC location resolver, PHIVOLCS earthquakes and volcano alerts, PAGASA weather and typhoons, PhilGEPS procurement with infra-spending accountability flags, PSA population, poverty, and economy (inflation, labor, health), NASA POWER solar/climate, Open-Meteo air quality, NASA MODIS NDVI, USGS earthquakes, NOAA IBTrACS typhoon tracks, and World Bank macro indicators. 32 tools across 12 sources, zero required API keys, with a cross-source multi-hazard risk profiler and a get_area_profile auto-stitch that composes demographics, economy, procurement, hazard, and weather in one call. Install: uvx ph-civic-data-mcp.

  • GreatApo/concrete-properties-mcp: Facilitates AI-driven analysis of reinforced concrete sections by providing a unified API interface for calculating geometric and material properties.

  • GooTec/NCBI-MCP: Facilitates access to NCBI Datasets through a modular MCP server with OpenAPI-driven endpoints for genome, gene, and taxonomy data.

  • leelasd/molecule_mcp: Facilitates chemistry-focused applications by visualizing molecules and retrieving molecular properties using SMILES codes, integrated with LLMs like Claude Desktop.

  • RLabs-Inc/ios-forensics-mcp: Facilitates forensic analysis of iOS file systems, enabling AI assistants to explore and report on digital artifacts.

  • koido/liftover-mcp: Facilitates genomic coordinate conversion using the Broad Institute's Liftover tool via a programmatic interface.

  • Rkm1999/CelestialMCP: CelestialMCP offers precise astronomical calculations for celestial object positions and rise/set times, integrating seamlessly with Claude AI.

  • simpolism/AstroMCP: AstroMCP provides AI assistants with astrological chart functionality, integrating seamlessly via the Model Context Protocol.

  • Nicolassaint/mathsIA_API: MathsIA API integrates FastAPI-MCP to enable AI models to manage a flashcard system for math learning, offering features for user management and progress tracking.

  • Xinruims/my_experiment: Enhance Roo Code with MCP server implementations for AI-driven coding tools, offering seamless integration and configuration across platforms.

  • wildsonbbl/gnnepcsaft_mcp_server: Facilitates communication and context management for GNNePCSAFT tools using the Model Context Protocol.

  • rperezll/mcp-lab: A personal lab exploring the Model Context Protocol SDK in TypeScript, featuring basic and advanced implementations like a Text-to-SQL server.

  • falahgs/Brave-Gemini-Research-MCP-Server: Empowers AI assistants with web search and research paper analysis using Brave Search API and Google's Gemini model.

  • Orthogonalpub/modelica_simulation_mcp_server: Facilitates Modelica model simulations, enabling LLMs to execute and manage Modelica-related tasks.

  • kobzevvv/moldsim-mcp: Injection molding simulation knowledge for AI — material properties (Cross-WLF, PVT, thermal, mechanical for 21 materials), process validation, DFM checklist, troubleshooting (230+ knowledge chunks with semantic search), and simulation spec generation.

  • ytworks/openMM-Doc-MCP: Facilitates semantic search through OpenMM molecular dynamics documentation using vector embeddings and FAISS for efficient retrieval, optimized for LLM integration.

  • arrismo/kaggle-mcp: Facilitates interaction with Kaggle by providing tools for dataset search, download, and EDA notebook generation via the Model Context Protocol.

  • mila-iqia/paperpal: Enhance your literature review process by integrating LLMs with arXiv and Hugging Face papers for seamless paper discussions and organization.

  • huang-sh/scanpy-mcp: Facilitates natural language-driven scRNA-Seq analysis using Scanpy, enabling seamless integration with AI clients and agent frameworks.

  • cafferychen777/ChatSpatial: Enables spatial transcriptomics analysis through natural language, integrating 60+ methods for spatial domains, deconvolution, cell communication, and trajectory analysis across Visium, Xenium, MERFISH and more.

  • datalayer/jupyter-earth-mcp-server: Facilitates geospatial analysis in Jupyter notebooks by integrating NASA Earthdata with Model Context Protocol.

  • fdmocho/mcp_server_nasa: Facilitates integration with NASA's Near Earth Object API, enabling date-specific data retrieval through an MCP server setup.

  • hiyenwong/arxiv_mcp: Facilitates the search and interpretation of academic papers from arXiv using MCP technology.

  • demouth/learn-mcp-server: A simple MCP server implementation for educational purposes, supporting basic arithmetic operations and integration with Claude Desktop.

  • Codeshark-NET/climate-triage-mcp: Integrates with the ClimateTriage API to facilitate searching for open source issues related to climate change and sustainability.

  • chcharcharlie/10XResearcher: 10XResearcher enhances Claude into a systematic research agent with local data storage, enabling iterative research methodologies and high-quality outcomes.

  • takashiishida/arxiv-latex-mcp: Facilitates precise interpretation of mathematical expressions in arXiv papers by processing LaTeX sources for Claude Desktop.

  • JackKuo666/PubChem-MCP-Server: Facilitates AI-driven searches and retrieval of chemical compound data from PubChem via a streamlined MCP interface.

  • HuaLuAI/CAD-MCP: CAD-MCP enables natural language-driven CAD operations across multiple software platforms, streamlining drawing tasks through intuitive text commands.

  • danimal141/arxiv-search-mcp: Facilitates searching and retrieving academic papers from arXiv.org with customizable parameters.

  • sebastien-le-paris/project-rules: Facilitates the integration of external tools and data sources with Cursor through the Model Context Protocol, enhancing AI project rule management and tool execution.

  • openags/paper-search-mcp: Facilitates seamless academic paper search and download from multiple sources, enhancing LLM workflows with MCP integration.

  • CoderiGenius/math-all-mcp: Facilitates precise mathematical computations via SSE for seamless integration with large language models.

  • Darkroaster/pubmearch: Facilitates rapid insights into medical research dynamics through advanced PubMed literature analysis.

  • cnosuke/mcp-wolfram-alpha: Facilitates high-precision computational queries and scientific data retrieval via Wolfram Alpha API for LLMs.

  • Kryzo/mcp-europeana: Generate comprehensive research documents using Europeana's digital library sources, integrating with AI tools via MCP.

  • ANewProfile/gbif-custom-mcp: Facilitates access to GBIF datasets via MCP servers, integrating with Claude Desktop for enhanced LLM context and BigQuery data retrieval.

  • GDAmitha/chimerax-alphafold-mcp: ChimeraX-AlphaFold-MCP facilitates seamless integration between ChimeraX, AlphaFold, and Claude AI, enabling advanced molecular visualization and structural analysis through natural language commands.

  • vitamin3615/uniprot-mcp-server: Facilitates language models in retrieving protein data from the UniProt database, supporting integration with Claude Desktop and other MCP-compatible AI applications.

  • tis-abe-akira/mcp-study: A TypeScript-based MCP server offering a whimsical cowsay interface with random responses and multiple character modes.

  • podaac/cmr-mcp: Integrates AI retrievals with NASA's Earthdata Catalog using the Model Context Protocol.

  • djalal/quran-mcp-server: Facilitates interaction with the Quran.com API for verse search, translation, and tafsir through an MCP server.

  • KunihiroS/google-patents-mcp: Facilitates Google Patents searches using SerpApi through an MCP server interface.

  • jkingsman/qanon-mcp-server: Facilitates sociological research by providing AI-driven access to a dataset of Q-Anon posts for analysis and exploration.

  • hogyzen12/lernean-lens: Facilitates collaborative reverse engineering of Solana binaries using Ghidra with MCP and eBPF extensions, integrating with Claude Desktop.

  • oOo0oOo/lean-lsp-mcp: Facilitates agentic interaction with the Lean theorem prover using the Language Server Protocol.

  • wheattoast11/openrouter-deep-research-mcp: Orchestrates AI-powered research using Claude and various OpenRouter models for comprehensive and adaptive research capabilities.

  • jerpint/paperpal: Facilitates literature reviews by integrating LLMs with arXiv and Hugging Face papers for seamless paper discussions and organization.

  • HappyAny/latex-mathml-mcp-server: Converts LaTeX mathematical expressions to MathML format using a lightweight MCP server implementation.

  • pathintegral-institute/mcp-servers: Open source MCP servers designed to facilitate scientific research through customizable server configurations and tool integrations.

  • botanicastudios/crossref-mcp: Facilitates seamless interaction with the Crossref API, enabling searches by title, author, and DOI retrieval.

  • JackKuo666/semanticscholar-MCP-Server: Facilitates interaction with the Semantic Scholar API, enabling paper searches, author details retrieval, and citation management.

  • adamrtalbot/mcp-nextflow: Facilitates Nextflow development and testing with a suite of tools for building, testing, and managing Nextflow environments.

  • JackKuo666/Sci-Hub-MCP-Server: Facilitates AI-driven access and analysis of academic papers via Sci-Hub using an MCP interface.

  • halllo/McpExperiments: A dotnet MCP server and client setup for local LLM integration, featuring time retrieval and OAuth server middleware experiments.

  • reading-plus-ai/mcp-server-deep-research: Facilitates in-depth research by transforming questions into structured, well-cited reports using an MCP server.

  • YuChenSSR/symbolica-mcp: Facilitates symbolic computation and quantum computing analysis within a containerized environment, integrating with AI for scientific and engineering applications.

  • YuChenSSR/quantum-simulator-mcp: A Docker-based quantum circuit simulator implementing MCP for seamless integration with clients like Claude, featuring noise models and OpenQASM 2.0 support.

  • Ray0907/mcp-arxiv: Facilitates seamless academic paper search and retrieval from arXiv for LLMs, bypassing complex HTML parsing.

  • tejpalvirk/quantitativeresearch: Facilitates the management of quantitative research knowledge graphs, enabling structured representation and analysis of research data, hypotheses, and results.

  • tejpalvirk/qualitativeresearch: Facilitates the management of qualitative research knowledge graphs, enabling structured representation and analysis of research data.

  • zhaoyouj/mcp-slicer: Facilitates seamless interaction between 3D Slicer and model clients for medical image processing and scene manipulation using natural language.

  • egtai/gmx-vmd-mcp: Facilitates molecular dynamics simulations and visualization by integrating GROMACS with VMD through a microservice architecture.

  • clssck/researcher-mcp: A research assistant server that integrates with Cline and Claude Desktop, utilizing Perplexity AI for intelligent search, documentation retrieval, API discovery, and code modernization assistance.

  • dexhunter/kaggle-mcp: Facilitates interaction with Kaggle APIs through a Model Context Protocol server, enabling note management and client notifications.

  • JackKuo666/Google-Scholar-MCP-Server: Facilitates AI-driven academic research by enabling seamless access to Google Scholar papers and author information through a Model Context Protocol interface.

  • jzhang17/prospect-research-mcp: A specialized MCP server for prospect research, offering semantic search, webpage scraping, and batch search processing on the Smithery Web infrastructure.

  • jbdamask/mcp-nih-reporter: Facilitates conversational searches of NIH-funded research projects and publications via the NIH RePORTER API.

  • JackKuo666/PubMed-MCP-Server: Facilitates AI-driven search and analysis of PubMed articles through a streamlined MCP interface.

  • vrtejus/pymol-mcp: PyMOL-MCP enables seamless integration of PyMOL with Claude AI for interactive molecular visualization and analysis through natural language commands.

  • edwardpwtsoi/mathjs-mcp: Facilitates mathematical calculations and derivative computations using MathJS.

  • PhelanShao/pubchem-mcp-server: Facilitates AI-driven queries to the PubChem database for comprehensive chemical compound data retrieval.

  • JackKuo666/medRxiv-MCP-Server: Facilitates AI-driven searches and access to medRxiv preprints, enhancing research capabilities in health sciences.

  • JackKuo666/bioRxiv-MCP-Server: Facilitates AI-driven searches and metadata retrieval of bioRxiv preprints through a streamlined MCP interface.

  • goern/bundestag-mcp: Facilitates interaction with German Bundestag protocols through a Model Context Protocol server.

  • khigashi1987/biopaper-mcp-search: Facilitates advanced search and analysis of biology papers using Europe PMC API, integrated with Claude Desktop for a comprehensive research assistant experience.

  • lutzcc1/bonsai-mcp: Facilitates search queries on indexed data using Bonsai's Search cluster, enabling LLMs like Claude to perform efficient searches.

  • suthio/brave-deep-research-mcp: Enhances Brave Search with Puppeteer-powered content extraction for comprehensive web research, allowing AI assistants to access detailed information beyond standard search results.

  • riemannzeta/patent_mcp_server: Facilitates access to USPTO patent data through APIs, enabling integration with Claude Desktop for efficient patent search and retrieval.

  • ProgramComputer/NASA-MCP-server: Facilitates AI model interactions with NASA's extensive data sources through a standardized interface.

  • ameeralns/DeepResearchMCP: DeepResearch MCP is an intelligent research assistant that conducts iterative research and generates comprehensive reports using the Model Context Protocol.

  • huanongfish/simple-pubmed: Access PubMed articles via the Entrez API, offering keyword search, abstracts, and full text for open access articles.

  • huanongfish/arxiv-mcp: Facilitates AI-driven searches and access to arXiv papers via a streamlined MCP interface.

  • huanongfish/pubmedmcp: Facilitates searching and retrieving biomedical literature from PubMed using MCP server capabilities.

  • datalayer/earthdata-mcp-server: Facilitates efficient dataset discovery and retrieval from NASA Earth Data for geospatial analysis.

  • JoshuaLelon/deep-research-mcp: A multi-agent research framework utilizing Python and MCP, featuring a FastMCP server for orchestrating AI agents in research tasks.

  • KYBvWHxW/mcp-servers: A versatile MCP server system featuring specialized servers for basic algorithms, quantum simulation, neuromorphic computing, and entropy-associated memory.

  • Cam10001110101/mcp-server-ollama-deep-researcher: Empowers AI assistants to conduct in-depth research using local LLMs through an iterative process of web search, summarization, and reflection.

  • nguyenvanduocit/research-kit: Research Kit enhances AI model capabilities by integrating with development tools like Jira and GitLab, automating workflows and managing documentation through natural language interactions.

  • GreatAuk/mcp-weather: A TypeScript starter template for building production-ready MCP servers with tools for fast development and automated version management.

  • h-yanagawa/research-mcp-server: Facilitates survey data retrieval and page creation in Notion through an MCP server.

  • nahmanmate/code-research-mcp-server: A Model Context Protocol server that facilitates the search and retrieval of programming resources from multiple developer platforms, enhancing LLM capabilities.

  • DaInfernalCoder/perplexity-mcp: A research and documentation assistant leveraging Perplexity AI for intelligent query complexity detection and model routing.

  • bmorphism/anti-bullshit-mcp-server: Analyzes claims, validates sources, and detects manipulation using diverse epistemological frameworks.

  • qpd-v/mcp-DEEPwebresearch: An advanced MCP server designed for deep web research, featuring intelligent search queuing, enhanced content extraction, and real-time integration with Claude.

  • adityak74/mcp-scholarly: Facilitates precise academic article searches through an MCP server with Arxiv integration.

  • blake365/usgs-quakes-mcp: Facilitates natural language queries to access USGS Earthquake data via Claude Desktop.

  • Jacck/mcp-ortools: Integrates Google's OR-Tools with Large Language Models for solving constraint satisfaction and optimization problems.

  • lenwood/cfbd-mcp-server: Enables AI assistants to query and analyze comprehensive college football statistics using the CFBD API within Claude Desktop.

  • andybrandt/mcp-simple-pubmed: Facilitates access to PubMed articles via the Entrez API, enabling keyword searches and retrieval of abstracts and full texts for open access articles.

  • andybrandt/mcp-simple-arxiv: Facilitates LLMs to search and access scientific papers on arXiv, providing metadata and abstracts through an MCP server.

  • blazickjp/arxiv-mcp-server: Facilitates AI-driven search and analysis of arXiv papers via a streamlined MCP interface.

  • daedalus/mcp-gmpy2 - MCP server exposing gmpy2 arbitrary precision arithmetic functions.

  • daedalus/mcp-manimgl - MCP server exposing manimgl mathematical animation functionality.

  • daedalus/mcp-number-theory - MCP server exposing number theory functions and factorization algorithms from RsaCtfTool.

  • daedalus/mcp-numpy - An MCP server that exposes NumPy functionality.

  • daedalus/mcp-oeis - MCP server for the OEIS (Online Encyclopedia of Integer Sequences) API.

  • daedalus/mcp-parigp - MCP server exposing cypari2 (PARI/GP) number theory library.

  • daedalus/mcp-qiskit - MCP server exposing Qiskit quantum computing functionality.

  • daedalus/mcp-sympy - MCP server that exposes SymPy's symbolic mathematics functionality.

  • daedalus/mcp-z3-prover - MCP server exposing Z3 solver API.

  • cajusticewatch/mcp-server: California criminal-justice accountability databases as MCP tools — 58 District Attorneys, 196 defenders, 1,620 currently sitting judges, 1,500 officer misconduct records, Commission on Judicial Performance discipline (247 records + semantic full-text search over 250 decision PDFs), 671 POST decertifications. 15 tools, public read-only, no auth, remote at https://cajusticewatch.com/api/mcp. Sources: cjp.ca.gov, post.ca.gov, official court rosters, named press coverage.

  • federicodeponte/openpaper-mcp: Generate full academic papers with verified citations via OpenPaper.dev using 18 specialized AI agents.

  • Archerkattri/mathlas: Airtight math tools for agents with no LLM inside and no API key: theorem search over a 3.68M-document index, PSLQ closed-form constant identification, exact OEIS sequence matching, and real Lean 4 kernel proof checking that returns the kernel's exact error for repair loops. stdio transport, no auth, works with Claude Code, Cursor, and any MCP client. Install: uvx mathlas-mcp.

  • edestory/mcp-starmeet: Local stdio MCP server for Vedic astrology data, including kundali birth-chart previews, daily Panchang calculations, and profiles for all 27 nakshatras. Uses the public star-meet.com API with no API key. Install from source: npm install && npm run build && node dist/index.js. MIT.

  • peopleworks/SignsofAI: Explainable AI-writing detection and originality checking for academic integrity, in English and Spanish. analyze_ai_writing returns a 0–100 score plus every tell behind it — overused vocabulary, rhetorical crutches, syntactic patterns, and sentence-rhythm burstiness — each with the matched text and a fix, instead of a black-box percentage. check_originality compares two or more documents against each other and returns the shared passages as evidence; search_catalog browses the bilingual catalog of AI-writing signs; extract_distinctive_phrases builds exact-phrase search links. Those four run locally and the text never leaves the machine; two optional server-backed tools (perplexity, cross-language paraphrase) disclose that they send text. stdio transport, .NET 10, MIT. Install from source: dotnet build src/SignsOfAI.Mcp -c Release. Browser demo: https://peopleworks.github.io/SignsofAI/

  • emircbngl/blender-optics-simulator: Build, align and render an optical bench inside Blender. Exposes element poses, port normals, mount limits, traced beam paths and detector readings as ground truth, so an agent can align mirrors, scan OPD or close an adaptive-optics loop. Ray plus Gaussian-q ABCD plus Jones/Stokes polarization, checked against textbook answers in CI.

  • emircbngl/tarhan: Physics-first materials and device simulation over 9 guarded tools: pn-diode drift-diffusion, PEMFC/SOFC fuel cells and electrochemistry. Every capability is pinned to a reproduction test against printed values from cited textbooks, and blocked capabilities exit non-zero instead of returning a plausible number. Install: pip install tarhan[mcp].

  • emircbngl/dhm-hybrid: Digital holographic microscopy: off-axis hologram reconstruction, quantitative phase imaging of live cells, autofocus, and reference-free phase retrieval via a hybrid classical plus CNN pipeline. Runs headlessly without the desktop GUI.